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The map label for this gene is ccmI [H]

Identifier: 238895109

GI number: 238895109

Start: 2987743

End: 2988585

Strand: Reverse

Name: ccmI [H]

Synonym: KP1_3148

Alternate gene names: 238895109

Gene position: 2988585-2987743 (Counterclockwise)

Preceding gene: 238895110

Following gene: 238895108

Centisome position: 56.94

GC content: 67.73

Gene sequence:

>843_bases
ATGAGCCTGTTGGTGGTTATCGTCGCGCTGCTGCTGGCTGGCGCGCTGGGGCTGCTGTACTTCCCGTGGTCGGGCAAAGG
GGCGGTAGACCGCGATGCTCTCAACCGCGCCCTGTACCAGTCGCGCCTGCAGGAGCTGGCGCAGGAGCGCGGCGAGGACA
ACCCGGCGCTGGTCGTCGAGCTTCAGAGCACGCTGCTGACCGATATCCCGCCGCAGCCGCTGCCTGGCGAACGGCCGCTA
AACCGCTGGGCGTTGTTTCCGGGCGCGCTGCTGCTGGTGGTCCTGAGTCTGGGCCTGTATCTGAAAACCAGCGATATTGG
TCAGGTGCTGCTCTGGCAGCAGGCTGAACGACATTATCCTGCACTGTTGCAGCAGGTTAAGGACCCGACGGCGGCGCCGC
TGCGAATGGATGAGCTGGCGGAGCTGCGGCTTGGCCTGCGCAGCCACCTGCAGGATACGCCGAACGACCTCGCCGGCTGG
CAGCTGCTTGGGCGGCTGGGCCTGTTGTTAAACGATGGCGAGACGGCGATCGGCGCCTTTGGCCGGGCGCATGCTCTGGC
GGCGGACGACCCGGCGGCGGCTTTCGATTACGCCAGCGCGCTGGTGCGGGCGGGGGATAGCGGTCAGGTTCGGATGGGCG
AGCTGCTGCTGCGTGACCTGCATCAGCGGCAGCCGAACAGCCTGCCGGTGCTGGAGATGCTGGCCCTGAGCGCGGTGCGT
AATGAAGATTACCCCGAGGCCGTGGCGGCCCTGCAGGCGTTGCTGGCCCGGCTACCGAAAGGGGATGCGCGGCGCGAGGC
GATCGTCCGCCAGCTGGCGCAGGCGCAGCAGCAGGCGCAATAA

Upstream 100 bases:

>100_bases
TAATTATCGCCCGCGCCCGCCGTCGCGACATTCCTGACGCGGCGCTCAGCGCCGAAGAGCGCCAGCGGCTGGCGGCATTA
TTGAAAGAAGGAAAAGAACG

Downstream 100 bases:

>100_bases
CTGCCCGGCGGCGCTGCGCAGGCGCGGGCCAGGGGATATGAGCTGACGGGATGCCTTTGTTGGCCGGGTCAGGCGCAGCC
GCCACCCGGCACAAAATCGG

Product: putative subunit of heme lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSLLVVIVALLLAGALGLLYFPWSGKGAVDRDALNRALYQSRLQELAQERGEDNPALVVELQSTLLTDIPPQPLPGERPL
NRWALFPGALLLVVLSLGLYLKTSDIGQVLLWQQAERHYPALLQQVKDPTAAPLRMDELAELRLGLRSHLQDTPNDLAGW
QLLGRLGLLLNDGETAIGAFGRAHALAADDPAAAFDYASALVRAGDSGQVRMGELLLRDLHQRQPNSLPVLEMLALSAVR
NEDYPEAVAALQALLARLPKGDARREAIVRQLAQAQQQAQ

Sequences:

>Translated_280_residues
MSLLVVIVALLLAGALGLLYFPWSGKGAVDRDALNRALYQSRLQELAQERGEDNPALVVELQSTLLTDIPPQPLPGERPL
NRWALFPGALLLVVLSLGLYLKTSDIGQVLLWQQAERHYPALLQQVKDPTAAPLRMDELAELRLGLRSHLQDTPNDLAGW
QLLGRLGLLLNDGETAIGAFGRAHALAADDPAAAFDYASALVRAGDSGQVRMGELLLRDLHQRQPNSLPVLEMLALSAVR
NEDYPEAVAALQALLARLPKGDARREAIVRQLAQAQQQAQ
>Mature_279_residues
SLLVVIVALLLAGALGLLYFPWSGKGAVDRDALNRALYQSRLQELAQERGEDNPALVVELQSTLLTDIPPQPLPGERPLN
RWALFPGALLLVVLSLGLYLKTSDIGQVLLWQQAERHYPALLQQVKDPTAAPLRMDELAELRLGLRSHLQDTPNDLAGWQ
LLGRLGLLLNDGETAIGAFGRAHALAADDPAAAFDYASALVRAGDSGQVRMGELLLRDLHQRQPNSLPVLEMLALSAVRN
EDYPEAVAALQALLARLPKGDARREAIVRQLAQAQQQAQ

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=210, Percent_Identity=37.1428571428571, Blast_Score=140, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 30494; Mature: 30362

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLVVIVALLLAGALGLLYFPWSGKGAVDRDALNRALYQSRLQELAQERGEDNPALVVE
CHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
LQSTLLTDIPPQPLPGERPLNRWALFPGALLLVVLSLGLYLKTSDIGQVLLWQQAERHYP
EHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH
ALLQQVKDPTAAPLRMDELAELRLGLRSHLQDTPNDLAGWQLLGRLGLLLNDGETAIGAF
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
GRAHALAADDPAAAFDYASALVRAGDSGQVRMGELLLRDLHQRQPNSLPVLEMLALSAVR
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
NEDYPEAVAALQALLARLPKGDARREAIVRQLAQAQQQAQ
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLLVVIVALLLAGALGLLYFPWSGKGAVDRDALNRALYQSRLQELAQERGEDNPALVVE
HHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
LQSTLLTDIPPQPLPGERPLNRWALFPGALLLVVLSLGLYLKTSDIGQVLLWQQAERHYP
EHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH
ALLQQVKDPTAAPLRMDELAELRLGLRSHLQDTPNDLAGWQLLGRLGLLLNDGETAIGAF
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
GRAHALAADDPAAAFDYASALVRAGDSGQVRMGELLLRDLHQRQPNSLPVLEMLALSAVR
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
NEDYPEAVAALQALLARLPKGDARREAIVRQLAQAQQQAQ
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]