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The map label for this gene is sodB [H]

Identifier: 238895038

GI number: 238895038

Start: 2921955

End: 2922536

Strand: Direct

Name: sodB [H]

Synonym: KP1_3068

Alternate gene names: 238895038

Gene position: 2921955-2922536 (Clockwise)

Preceding gene: 238895036

Following gene: 238895040

Centisome position: 55.67

GC content: 57.22

Gene sequence:

>582_bases
ATGTCGTTTGAATTACCTGCATTACCATATGCAAAAGACGCCCTGGCGCCGCACATTTCCGCAGAAACCCTGGAATATCA
CTACGGTAAACACCACCAGGCGTATGTCACTAACCTCAACAACCTGATCAAAGGCACTGCGTTCGAAGGCAAGTCCCTCG
AAGAGATCGTCCGCACGTCTGAAGGCGGCGTATTCAACAACGCAGCGCAGGTCTGGAACCACACCTTCTACTGGAACTGC
CTGGCGCCTAACGCCGGCGGCGAACCGGAAGGCGAACTGGCGGCCGCAATCGCCAAATCTTTCGGCAGCTTCACGGATTT
TAAAGCCAAATTTACCGATGCCGCGGCGAAAAACTTCGGCGCTGGCTGGACCTGGCTGGTCAAAAATGCCGACGGCAGCC
TGGCGATCGTCTCCACCAGCAACGCCGGCACCCCGCTGACCACCGACGCGAAGCCGCTGCTGACCGTTGACGTTTGGGAA
CACGCCTACTACATCGACTACCGCAACGCCCGTCCAAGCTACCTGGACCACTTCTGGGCGCTGGTAAACTGGAAGTTTGT
TGCGGCTAACCTGGCGGCATAA

Upstream 100 bases:

>100_bases
CGCCCGGGACGCGACAGCGTCGGGCGGTCAGAACACGATTCAGGTGAAAACCTCATCCTGTCAATGTGAGATAAAACAAA
AAGTTATAAGGAGAGTAGCA

Downstream 100 bases:

>100_bases
ACGACAAACCGCAGCGGGGTCTCCCCGGCTGCGGTTTTTTTTGCCCTTGCCCAGCCGATGATTACTGGCTGGCGAAAGCC
TCTTCCGGCTGCGCTCGCCC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSFELPALPYAKDALAPHISAETLEYHYGKHHQAYVTNLNNLIKGTAFEGKSLEEIVRTSEGGVFNNAAQVWNHTFYWNC
LAPNAGGEPEGELAAAIAKSFGSFTDFKAKFTDAAAKNFGAGWTWLVKNADGSLAIVSTSNAGTPLTTDAKPLLTVDVWE
HAYYIDYRNARPSYLDHFWALVNWKFVAANLAA

Sequences:

>Translated_193_residues
MSFELPALPYAKDALAPHISAETLEYHYGKHHQAYVTNLNNLIKGTAFEGKSLEEIVRTSEGGVFNNAAQVWNHTFYWNC
LAPNAGGEPEGELAAAIAKSFGSFTDFKAKFTDAAAKNFGAGWTWLVKNADGSLAIVSTSNAGTPLTTDAKPLLTVDVWE
HAYYIDYRNARPSYLDHFWALVNWKFVAANLAA
>Mature_192_residues
SFELPALPYAKDALAPHISAETLEYHYGKHHQAYVTNLNNLIKGTAFEGKSLEEIVRTSEGGVFNNAAQVWNHTFYWNCL
APNAGGEPEGELAAAIAKSFGSFTDFKAKFTDAAAKNFGAGWTWLVKNADGSLAIVSTSNAGTPLTTDAKPLLTVDVWEH
AYYIDYRNARPSYLDHFWALVNWKFVAANLAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=43.5, Blast_Score=155, Evalue=2e-38,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=43.5, Blast_Score=155, Evalue=2e-38,
Organism=Homo sapiens, GI67782309, Length=192, Percent_Identity=38.5416666666667, Blast_Score=118, Evalue=3e-27,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=89.6373056994819, Blast_Score=365, Evalue=1e-102,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=42.9951690821256, Blast_Score=164, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=192, Percent_Identity=37.5, Blast_Score=132, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17569479, Length=190, Percent_Identity=35.2631578947368, Blast_Score=126, Evalue=6e-30,
Organism=Saccharomyces cerevisiae, GI6321796, Length=201, Percent_Identity=34.8258706467662, Blast_Score=107, Evalue=8e-25,
Organism=Drosophila melanogaster, GI17136812, Length=192, Percent_Identity=37.5, Blast_Score=124, Evalue=5e-29,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21178; Mature: 21047

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFELPALPYAKDALAPHISAETLEYHYGKHHQAYVTNLNNLIKGTAFEGKSLEEIVRTS
CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCC
EGGVFNNAAQVWNHTFYWNCLAPNAGGEPEGELAAAIAKSFGSFTDFKAKFTDAAAKNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
AGWTWLVKNADGSLAIVSTSNAGTPLTTDAKPLLTVDVWEHAYYIDYRNARPSYLDHFWA
CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHH
LVNWKFVAANLAA
HHHHEEEEEECCC
>Mature Secondary Structure 
SFELPALPYAKDALAPHISAETLEYHYGKHHQAYVTNLNNLIKGTAFEGKSLEEIVRTS
CCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHCC
EGGVFNNAAQVWNHTFYWNCLAPNAGGEPEGELAAAIAKSFGSFTDFKAKFTDAAAKNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
AGWTWLVKNADGSLAIVSTSNAGTPLTTDAKPLLTVDVWEHAYYIDYRNARPSYLDHFWA
CCEEEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCHHHHHHHH
LVNWKFVAANLAA
HHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]