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The map label for this gene is ydgJ [H]

Identifier: 238895001

GI number: 238895001

Start: 2889545

End: 2890606

Strand: Reverse

Name: ydgJ [H]

Synonym: KP1_3028

Alternate gene names: 238895001

Gene position: 2890606-2889545 (Counterclockwise)

Preceding gene: 238895014

Following gene: 238894998

Centisome position: 55.07

GC content: 61.02

Gene sequence:

>1062_bases
TTGCATAAGCGAGGCGGTAAGATGAGCGATGCGATCCGGGTGGGGCTGGTGGGGTTCGGTTACGCCAGCAAAAAGTTTCA
TGCGCCGTTGATCGGCGGCACGCCGGGTATGGCGCTGAAGGCGGTCGCCAGCAGCGACGCCGATAAGGTCCATGCCGATT
GGCCTGGCGTGAAGGTAATGAGTGCGCCGGGGGATCTGCTGGACGACCCGGATATCGATCTGGTGGTCATCGCCACCCCG
AACGACACCCACTTTCCGCTGGCGAAAGCGGCGCTGGAGGCGGGAAAGCATGTTGTGGTGGATAAGCCCTTTACCGTGAC
ACTGTCACAAGCTCGTGAGCTGGAAAGCCTGGCGAAGCACTGCGGTCGGATACTTTCGGTGTTTCATAACCGGCGCTGGG
ACAGCGATTTCTTAACGGTCAGCGCGTTAATCAACGAAGGTCAGCTGGGGGAGGTGTGTTACTTCGAGTCGCATTTCGAT
CGCTTCCGACCACAGGTGCGCCAGCGCTGGCGTGAGCAGGCGGGTCCTGGCAGCGGCATATGGTATGACCTCGCGCCGCA
TCTGCTCGACCAGGTCGTGGTGCTGTTTGGCCTGCCGGTAAGCATCACGGTGGACCTCGCGCAGCTTCGGCCCGGCGCGC
AATCCACCGACTATTTTCACGCCGTGCTGGCCTATCCGCAGCGGCGGGTAGTACTGCATGGTACGTTACTCGCCGCCGCG
GAGAGCGCGCGCTTTATCGTCCACGGCTCGCGGGCCAGCTATATTAAGTACGGTCTTGACCCGCAGGAGGAGCGGCTAAA
AAACGGTGAACGGCTGCCGCAGGAGGACTGGGGATATGATATGCGCGACGGTACCCTGACCCGCGCCGAAGGGGATGAAC
GTAGTCAGGAGAAATGGCTGACGCTACCGGGTAATTATCCCGCCTACTATGCCGCTATCCGCGACGCCCTTAACGGCGTA
GGGGAAAACCCGGTCCCGGCCAGCGAGGCGATTCAGATAATGACCCTGATTGAGTTGGGTATTGAGTCGGCCAGACATCG
CGCCACGCTCAGCCTGGTCTGA

Upstream 100 bases:

>100_bases
GTCTGATTTCTCTCACTTGCATGTAAGTCGCAAAGTGAGGAATGATAAGTTTTGCTCACGGTTTGTAAAATTATTCTCAT
TAACCTGGTGTTGATATCAG

Downstream 100 bases:

>100_bases
GGAGGAGCCCGGCAGCACGGCTGCCGGGCCGGTTATCAGCCTTTGGCAACCCGCTGAATGAGGGCGGCTTTTTCCTGTTC
GCCGAGGAACGCCAGGGTCA

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MHKRGGKMSDAIRVGLVGFGYASKKFHAPLIGGTPGMALKAVASSDADKVHADWPGVKVMSAPGDLLDDPDIDLVVIATP
NDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELESLAKHCGRILSVFHNRRWDSDFLTVSALINEGQLGEVCYFESHFD
RFRPQVRQRWREQAGPGSGIWYDLAPHLLDQVVVLFGLPVSITVDLAQLRPGAQSTDYFHAVLAYPQRRVVLHGTLLAAA
ESARFIVHGSRASYIKYGLDPQEERLKNGERLPQEDWGYDMRDGTLTRAEGDERSQEKWLTLPGNYPAYYAAIRDALNGV
GENPVPASEAIQIMTLIELGIESARHRATLSLV

Sequences:

>Translated_353_residues
MHKRGGKMSDAIRVGLVGFGYASKKFHAPLIGGTPGMALKAVASSDADKVHADWPGVKVMSAPGDLLDDPDIDLVVIATP
NDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELESLAKHCGRILSVFHNRRWDSDFLTVSALINEGQLGEVCYFESHFD
RFRPQVRQRWREQAGPGSGIWYDLAPHLLDQVVVLFGLPVSITVDLAQLRPGAQSTDYFHAVLAYPQRRVVLHGTLLAAA
ESARFIVHGSRASYIKYGLDPQEERLKNGERLPQEDWGYDMRDGTLTRAEGDERSQEKWLTLPGNYPAYYAAIRDALNGV
GENPVPASEAIQIMTLIELGIESARHRATLSLV
>Mature_353_residues
MHKRGGKMSDAIRVGLVGFGYASKKFHAPLIGGTPGMALKAVASSDADKVHADWPGVKVMSAPGDLLDDPDIDLVVIATP
NDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELESLAKHCGRILSVFHNRRWDSDFLTVSALINEGQLGEVCYFESHFD
RFRPQVRQRWREQAGPGSGIWYDLAPHLLDQVVVLFGLPVSITVDLAQLRPGAQSTDYFHAVLAYPQRRVVLHGTLLAAA
ESARFIVHGSRASYIKYGLDPQEERLKNGERLPQEDWGYDMRDGTLTRAEGDERSQEKWLTLPGNYPAYYAAIRDALNGV
GENPVPASEAIQIMTLIELGIESARHRATLSLV

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=345, Percent_Identity=81.4492753623188, Blast_Score=579, Evalue=1e-167,
Organism=Escherichia coli, GI1789848, Length=337, Percent_Identity=34.1246290801187, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1787574, Length=207, Percent_Identity=27.0531400966184, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38884; Mature: 38884

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKRGGKMSDAIRVGLVGFGYASKKFHAPLIGGTPGMALKAVASSDADKVHADWPGVKVM
CCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCEEEE
SAPGDLLDDPDIDLVVIATPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELESLAKH
ECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHH
CGRILSVFHNRRWDSDFLTVSALINEGQLGEVCYFESHFDRFRPQVRQRWREQAGPGSGI
HHHHHHHHHCCCCCCHHEEEEEHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
WYDLAPHLLDQVVVLFGLPVSITVDLAQLRPGAQSTDYFHAVLAYPQRRVVLHGTLLAAA
HHHHHHHHHHHHHHHHCCCHHEEEEHHHCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHH
ESARFIVHGSRASYIKYGLDPQEERLKNGERLPQEDWGYDMRDGTLTRAEGDERSQEKWL
CCCEEEEECCCCCEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCEE
TLPGNYPAYYAAIRDALNGVGENPVPASEAIQIMTLIELGIESARHRATLSLV
ECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure
MHKRGGKMSDAIRVGLVGFGYASKKFHAPLIGGTPGMALKAVASSDADKVHADWPGVKVM
CCCCCCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEECCCCCEEEE
SAPGDLLDDPDIDLVVIATPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELESLAKH
ECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEECCCCEEEHHHHHHHHHHHHH
CGRILSVFHNRRWDSDFLTVSALINEGQLGEVCYFESHFDRFRPQVRQRWREQAGPGSGI
HHHHHHHHHCCCCCCHHEEEEEHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCC
WYDLAPHLLDQVVVLFGLPVSITVDLAQLRPGAQSTDYFHAVLAYPQRRVVLHGTLLAAA
HHHHHHHHHHHHHHHHCCCHHEEEEHHHCCCCCCCCHHHHHHHHCCCCEEEEEHHHHHHH
ESARFIVHGSRASYIKYGLDPQEERLKNGERLPQEDWGYDMRDGTLTRAEGDERSQEKWL
CCCEEEEECCCCCEEEECCCCHHHHHCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCEE
TLPGNYPAYYAAIRDALNGVGENPVPASEAIQIMTLIELGIESARHRATLSLV
ECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]