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The map label for this gene is ytfH [C]

Identifier: 238894998

GI number: 238894998

Start: 2886538

End: 2887020

Strand: Reverse

Name: ytfH [C]

Synonym: KP1_3025

Alternate gene names: 238894998

Gene position: 2887020-2886538 (Counterclockwise)

Preceding gene: 238895001

Following gene: 238894997

Centisome position: 55.01

GC content: 52.17

Gene sequence:

>483_bases
TTGATAAGGAGCGCGCAGATGGCAAAGCAGGAATCACTTAGAACCAGTGAATGTCCGGTGGCGAGAACGTTGGAATCAAT
TGGTGAACGCTGGTGCCTGATGATTATCCGCGAAGCATTTGACGATGTGCGGAGATTCAGCGAGTTTCAAAAAAATTTGG
GGCTGGCCAAAAATATCCTTGCCTCGCGGCTGAAGCATCTGGTTGATATCGGTATTTTCGAGATTTTACCGGCATCGGAT
GGCAGCGCATACAAGGAATATGTCCTGACTGAAAAGGGGCGCTCCGTGTTTCCCATTGTTGTTGCGCTGCGGCAATGGGG
AGAGCGTTATATGTTTGAGCAAGGGGAAACCTATTCGGTCCTGCTGGATAACGCGCACGGCCAGCCCCTTCAGTATCTGG
ATGTGCGTTCCGCTCAGGGGGATAAACTGCAACCAGGCGACTGTCATCGCCGGCGCATTGTGTCCGATACCCGCGCCGAA
TAA

Upstream 100 bases:

>100_bases
GGCTGGTTGCTTTTTAAAACTAGTATGCCTATAGAATTAGCCTTAGTGGTTTTTTTTTGCAACTGGTAAAGGTGAGGATT
AAGCTAGATCAGTAGATAAA

Downstream 100 bases:

>100_bases
TGGCGTGAAGAATTTGCAGGATACCAGCGAGAATACGAGCGTATCGCTAAAGGGTCATGGAACAATCCTGACGTGTTTTT
TTGCGAACTGCTTCTGATGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MIRSAQMAKQESLRTSECPVARTLESIGERWCLMIIREAFDDVRRFSEFQKNLGLAKNILASRLKHLVDIGIFEILPASD
GSAYKEYVLTEKGRSVFPIVVALRQWGERYMFEQGETYSVLLDNAHGQPLQYLDVRSAQGDKLQPGDCHRRRIVSDTRAE

Sequences:

>Translated_160_residues
MIRSAQMAKQESLRTSECPVARTLESIGERWCLMIIREAFDDVRRFSEFQKNLGLAKNILASRLKHLVDIGIFEILPASD
GSAYKEYVLTEKGRSVFPIVVALRQWGERYMFEQGETYSVLLDNAHGQPLQYLDVRSAQGDKLQPGDCHRRRIVSDTRAE
>Mature_160_residues
MIRSAQMAKQESLRTSECPVARTLESIGERWCLMIIREAFDDVRRFSEFQKNLGLAKNILASRLKHLVDIGIFEILPASD
GSAYKEYVLTEKGRSVFPIVVALRQWGERYMFEQGETYSVLLDNAHGQPLQYLDVRSAQGDKLQPGDCHRRRIVSDTRAE

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 18334; Mature: 18334

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSAQMAKQESLRTSECPVARTLESIGERWCLMIIREAFDDVRRFSEFQKNLGLAKNIL
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
ASRLKHLVDIGIFEILPASDGSAYKEYVLTEKGRSVFPIVVALRQWGERYMFEQGETYSV
HHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
LLDNAHGQPLQYLDVRSAQGDKLQPGDCHRRRIVSDTRAE
EEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MIRSAQMAKQESLRTSECPVARTLESIGERWCLMIIREAFDDVRRFSEFQKNLGLAKNIL
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
ASRLKHLVDIGIFEILPASDGSAYKEYVLTEKGRSVFPIVVALRQWGERYMFEQGETYSV
HHHHHHHHHHHHHHEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
LLDNAHGQPLQYLDVRSAQGDKLQPGDCHRRRIVSDTRAE
EEECCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]