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The map label for this gene is ygdR [H]

Identifier: 238894945

GI number: 238894945

Start: 2834176

End: 2834397

Strand: Reverse

Name: ygdR [H]

Synonym: KP1_2970

Alternate gene names: 238894945

Gene position: 2834397-2834176 (Counterclockwise)

Preceding gene: 238894946

Following gene: 238894942

Centisome position: 54.0

GC content: 49.55

Gene sequence:

>222_bases
ATGAAAAAGCCATTCATGGTGATTTGCGCCGGCGCGATGCTGGCGCTGCTGGCAGGTTGTTCGTCAAACTACGTTATGAC
CACGAAGAGCGGTCAAACTATCGTTACCCACGGCAAGCCGCAGCTGGATAAAGAAACGGGGATGACCAGCTATATCGATG
AGTCAGGTAATAAGCGGGAAATTAACAGCAGCGATGTGTCGCAGCTGGTTGAAGATAATTAA

Upstream 100 bases:

>100_bases
TCACCCTCTGTTACAAACGCCTATTGGCCTGACAAACCAGATGGTTATACACTTAACCCTTTCCCGCCACGTGCGGGCAG
TGGTAATCAGTGGAGATAAA

Downstream 100 bases:

>100_bases
GTTCTGACCTCCCGGTTTGCCCGCGATGGACAAACCGGGAGTCCTGCCAGTTACTTCCTCAGCGTCGGCGCCGTGCTGTG
AATCTCATGCACGCGTTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MKKPFMVICAGAMLALLAGCSSNYVMTTKSGQTIVTHGKPQLDKETGMTSYIDESGNKREINSSDVSQLVEDN

Sequences:

>Translated_73_residues
MKKPFMVICAGAMLALLAGCSSNYVMTTKSGQTIVTHGKPQLDKETGMTSYIDESGNKREINSSDVSQLVEDN
>Mature_73_residues
MKKPFMVICAGAMLALLAGCSSNYVMTTKSGQTIVTHGKPQLDKETGMTSYIDESGNKREINSSDVSQLVEDN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdI [H]

Homologues:

Organism=Escherichia coli, GI1789198, Length=71, Percent_Identity=49.2957746478873, Blast_Score=79, Evalue=4e-17,
Organism=Escherichia coli, GI87082162, Length=72, Percent_Identity=52.7777777777778, Blast_Score=75, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010305 [H]

Pfam domain/function: PF06004 DUF903 [H]

EC number: NA

Molecular weight: Translated: 7872; Mature: 7872

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
6.8 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPFMVICAGAMLALLAGCSSNYVMTTKSGQTIVTHGKPQLDKETGMTSYIDESGNKRE
CCCCEEEEHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCCHHHCCCCCCCC
INSSDVSQLVEDN
CCHHHHHHHHCCC
>Mature Secondary Structure
MKKPFMVICAGAMLALLAGCSSNYVMTTKSGQTIVTHGKPQLDKETGMTSYIDESGNKRE
CCCCEEEEHHHHHHHHHHCCCCCEEEEECCCCEEEECCCCCCCCCCCCCHHHCCCCCCCC
INSSDVSQLVEDN
CCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]