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The map label for this gene is frnC [H]

Identifier: 238894898

GI number: 238894898

Start: 2784768

End: 2785616

Strand: Direct

Name: frnC [H]

Synonym: KP1_2919

Alternate gene names: 238894898

Gene position: 2784768-2785616 (Clockwise)

Preceding gene: 238894897

Following gene: 238894899

Centisome position: 53.06

GC content: 67.49

Gene sequence:

>849_bases
ATGAGCCTGGTCGACTATACCATCGCGGTTCGCCGCCGCCCGGAGTGGCGTAGAGTGCGCCTGCAGCCTGGCCTGTGGCT
GGCGTGGGCGGTGATGATCGCCGCCCTGTTAATGGCCATTGCCCCACAGTGGTTTACCTCCTCTAACCCGCTGGAGGGGA
TCCCCGGCGCTCAGCGCCTGGCGCCGCAGGCGCACTACTGGCTGGGTACCGACCAGCTGGGGCGCGACCTGTGGACGCGG
GTGGTTTACGGCGCGGTGCATTCCCTGTCGGCGGCGCTGATCGCCGTCGCCATCGGCCTGGTGGTGGGTACCACCCTTGG
CACCCTCGCCGGGGCGCTGGCCGGACGCGTGGAATCCACCATCATGCGCCTGGTCGATGTCCTGCTGGCCATCCCCTCCC
TGCTGCTGCAGCTCACGGTGATTATTCTGCTGGGTTTCGGCACGGTAAATGCGGCGGTGGCGGTTGGCGTCGCGGCTATC
GCCAGCTTCGCGCGCCTGGCGCGAGCAGAAGTGGTGCGCGTGCGCCACAGCGATTACGTCGAGGCGGCCCGGGGCAGCGG
CGGCACTTTTTTCGCCGTCTTCTGGCGCCATATTCTGCCCAACTCGCTCACTGCGGTGCTTGCTTTCGCGACGCTGCAGT
TCGGTCAGGCGATGTTGGCCCTGGCCACCCTCAGCTTCCTCGGCTACGGCACTCCGCCGCCGGTCCCGGAGTGGGGACTA
CTGATCGCCGAAGGTCGCAATTACCTGTCAACCGCCTGGTGGCTGACCACCTTCCCCGGCCTCGCCGTGGTCGCCGTGGT
CCTTGCCGCCAATCGTCTTAGCCGCCAGTGGAGTGGAGCACGCCCATGA

Upstream 100 bases:

>100_bases
TGATGATCTCCGCCCTCGGTTTCGTCCTGATCAACCTGCTGGTCGACCTGGTCATGCCGCGACTGGACCCCCGACTCCAT
TTACAGACCGGAGGTGCGAA

Downstream 100 bases:

>100_bases
CCGTTTTGTCCGTTGAAGATCTGCGCATCAGCTACCGCTCGCGGGGCGAATGGCGCGAGGTGGTGCACAACATCAGCTTT
TCCATCCAGCGCGGCGAAAT

Product: ABC-type transporter permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSLVDYTIAVRRRPEWRRVRLQPGLWLAWAVMIAALLMAIAPQWFTSSNPLEGIPGAQRLAPQAHYWLGTDQLGRDLWTR
VVYGAVHSLSAALIAVAIGLVVGTTLGTLAGALAGRVESTIMRLVDVLLAIPSLLLQLTVIILLGFGTVNAAVAVGVAAI
ASFARLARAEVVRVRHSDYVEAARGSGGTFFAVFWRHILPNSLTAVLAFATLQFGQAMLALATLSFLGYGTPPPVPEWGL
LIAEGRNYLSTAWWLTTFPGLAVVAVVLAANRLSRQWSGARP

Sequences:

>Translated_282_residues
MSLVDYTIAVRRRPEWRRVRLQPGLWLAWAVMIAALLMAIAPQWFTSSNPLEGIPGAQRLAPQAHYWLGTDQLGRDLWTR
VVYGAVHSLSAALIAVAIGLVVGTTLGTLAGALAGRVESTIMRLVDVLLAIPSLLLQLTVIILLGFGTVNAAVAVGVAAI
ASFARLARAEVVRVRHSDYVEAARGSGGTFFAVFWRHILPNSLTAVLAFATLQFGQAMLALATLSFLGYGTPPPVPEWGL
LIAEGRNYLSTAWWLTTFPGLAVVAVVLAANRLSRQWSGARP
>Mature_281_residues
SLVDYTIAVRRRPEWRRVRLQPGLWLAWAVMIAALLMAIAPQWFTSSNPLEGIPGAQRLAPQAHYWLGTDQLGRDLWTRV
VYGAVHSLSAALIAVAIGLVVGTTLGTLAGALAGRVESTIMRLVDVLLAIPSLLLQLTVIILLGFGTVNAAVAVGVAAIA
SFARLARAEVVRVRHSDYVEAARGSGGTFFAVFWRHILPNSLTAVLAFATLQFGQAMLALATLSFLGYGTPPPVPEWGLL
IAEGRNYLSTAWWLTTFPGLAVVAVVLAANRLSRQWSGARP

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=279, Percent_Identity=36.9175627240143, Blast_Score=177, Evalue=5e-46,
Organism=Escherichia coli, GI1787054, Length=260, Percent_Identity=38.4615384615385, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1789964, Length=263, Percent_Identity=37.6425855513308, Blast_Score=144, Evalue=9e-36,
Organism=Escherichia coli, GI1789889, Length=229, Percent_Identity=34.061135371179, Blast_Score=134, Evalue=6e-33,
Organism=Escherichia coli, GI1787549, Length=243, Percent_Identity=31.2757201646091, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787498, Length=209, Percent_Identity=33.0143540669856, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1788505, Length=258, Percent_Identity=29.0697674418605, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30286; Mature: 30155

Theoretical pI: Translated: 11.57; Mature: 11.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVDYTIAVRRRPEWRRVRLQPGLWLAWAVMIAALLMAIAPQWFTSSNPLEGIPGAQRL
CCHHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHH
APQAHYWLGTDQLGRDLWTRVVYGAVHSLSAALIAVAIGLVVGTTLGTLAGALAGRVEST
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMRLVDVLLAIPSLLLQLTVIILLGFGTVNAAVAVGVAAIASFARLARAEVVRVRHSDYV
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAARGSGGTFFAVFWRHILPNSLTAVLAFATLQFGQAMLALATLSFLGYGTPPPVPEWGL
HHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
LIAEGRNYLSTAWWLTTFPGLAVVAVVLAANRLSRQWSGARP
EEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLVDYTIAVRRRPEWRRVRLQPGLWLAWAVMIAALLMAIAPQWFTSSNPLEGIPGAQRL
CHHHHHHHHHCCCCHHEEEECCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCHHHH
APQAHYWLGTDQLGRDLWTRVVYGAVHSLSAALIAVAIGLVVGTTLGTLAGALAGRVEST
CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IMRLVDVLLAIPSLLLQLTVIILLGFGTVNAAVAVGVAAIASFARLARAEVVRVRHSDYV
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAARGSGGTFFAVFWRHILPNSLTAVLAFATLQFGQAMLALATLSFLGYGTPPPVPEWGL
HHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
LIAEGRNYLSTAWWLTTFPGLAVVAVVLAANRLSRQWSGARP
EEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]