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The map label for this gene is ltrA [H]

Identifier: 238894887

GI number: 238894887

Start: 2771931

End: 2772824

Strand: Reverse

Name: ltrA [H]

Synonym: KP1_2906

Alternate gene names: 238894887

Gene position: 2772824-2771931 (Counterclockwise)

Preceding gene: 238894893

Following gene: 238894884

Centisome position: 52.83

GC content: 64.32

Gene sequence:

>894_bases
ATGGACAGGGTTATTGCTGCGCAGGTGTATCTGCGCATCTGCGAGCTGGGAAGTCTTAGCGCCGCGGCGCGGGCGCTGGG
GATGTCGCGCCCGATGGTGAGCCGCTATCTGGAACAGATGGAGAGCTGGGCCGGCGCCCGGCTGATCCATCGCTCAACCC
GGCGGCTGACGCTGACCCCGGCCGGGGAGAAGGTGTTGATCAAGACCCGCTGTTTGACGCGGATCGCCGATGAAATCGCC
GGCGAGCGTCAGCGGGCCGATCCCAGCGGCACGCTGCGCGTCGCCTGCGCGCACTTTACCGCCATGCAGCTGATCTCCCC
GCTGCTACCGGACTTTCTCGCCCGCTATCCACTGCTGCGCCTGGAGCTGGATATCAATAACCATCCGGTCAGCCTGATCG
GCGAGCGTATCGACGTGGCCATTCGCATTACCGACAACCCGGAAGCGGGGGCCATCGCTCGTCGCCTCGGAGTGTGCCGT
TCGCTGCTCTGCGCCGCGCCGCGCTGGATGCGCCAGCATGGACCGTTGACGACGCCCGACGATCTGCAACGACATAACTG
CCTGCTATACAGCCATTTCGCCAGCCAGCACTGGCAGTTCAGCGATGCGCAGGGGCGGGAAGCGTCGGTGGCGGTGAACG
GTAATCTGAGCGCAGGGATATCTTCATTGCTGCTGGAGGCGGCGGTTGCCGGATGCGGCATTGCGATGCTTCCCGAACTG
GAGGCCCGGAGCGCGATTGCCAGCGGCACGCTGGAGGTGGTGCTTCCGGAGTGGACGCCGAAGGCGTTGAGCGTTTACGG
CATCTATCTTTCCCGCGACTACCAACCTGACGGATTACCGCTATTTCTTGATGCGCTGCAGAGGCGTCTGGGAGAGGAGA
CTGGCCACGGCTGA

Upstream 100 bases:

>100_bases
TAACAGGTGAATGCGTTCCATTGTACGGATTTCGCTATTTGATAGAATTCCTGAAACAAGAGATGCTGAGTTTCATAAAG
CGTGCAGATCAGGGGGAGTG

Downstream 100 bases:

>100_bases
GTCTTGGCGCTTCGTGCCCCGGCAGCACCGGCGGAAGGCAATCCCGCCGGTAGGCTGACGTTGAGCTTTATTCGTTGCCC
CACTGATTAAGGAAATTAGC

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDRVIAAQVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTPAGEKVLIKTRCLTRIADEIA
GERQRADPSGTLRVACAHFTAMQLISPLLPDFLARYPLLRLELDINNHPVSLIGERIDVAIRITDNPEAGAIARRLGVCR
SLLCAAPRWMRQHGPLTTPDDLQRHNCLLYSHFASQHWQFSDAQGREASVAVNGNLSAGISSLLLEAAVAGCGIAMLPEL
EARSAIASGTLEVVLPEWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRLGEETGHG

Sequences:

>Translated_297_residues
MDRVIAAQVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTPAGEKVLIKTRCLTRIADEIA
GERQRADPSGTLRVACAHFTAMQLISPLLPDFLARYPLLRLELDINNHPVSLIGERIDVAIRITDNPEAGAIARRLGVCR
SLLCAAPRWMRQHGPLTTPDDLQRHNCLLYSHFASQHWQFSDAQGREASVAVNGNLSAGISSLLLEAAVAGCGIAMLPEL
EARSAIASGTLEVVLPEWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRLGEETGHG
>Mature_297_residues
MDRVIAAQVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTPAGEKVLIKTRCLTRIADEIA
GERQRADPSGTLRVACAHFTAMQLISPLLPDFLARYPLLRLELDINNHPVSLIGERIDVAIRITDNPEAGAIARRLGVCR
SLLCAAPRWMRQHGPLTTPDDLQRHNCLLYSHFASQHWQFSDAQGREASVAVNGNLSAGISSLLLEAAVAGCGIAMLPEL
EARSAIASGTLEVVLPEWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRLGEETGHG

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=277, Percent_Identity=31.4079422382672, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789440, Length=296, Percent_Identity=28.7162162162162, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=28.5223367697594, Blast_Score=124, Evalue=6e-30,
Organism=Escherichia coli, GI87081978, Length=271, Percent_Identity=31.7343173431734, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787128, Length=277, Percent_Identity=28.8808664259928, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=29.3918918918919, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=26.5734265734266, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789173, Length=235, Percent_Identity=25.9574468085106, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI157672245, Length=268, Percent_Identity=29.8507462686567, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=256, Percent_Identity=28.90625, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32596; Mature: 32596

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRVIAAQVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTP
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
AGEKVLIKTRCLTRIADEIAGERQRADPSGTLRVACAHFTAMQLISPLLPDFLARYPLLR
CCCEEEHHHHHHHHHHHHHCCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCEEE
LELDINNHPVSLIGERIDVAIRITDNPEAGAIARRLGVCRSLLCAAPRWMRQHGPLTTPD
EEEECCCCCHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHH
DLQRHNCLLYSHFASQHWQFSDAQGREASVAVNGNLSAGISSLLLEAAVAGCGIAMLPEL
HHHHCCEEEEEHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCH
EARSAIASGTLEVVLPEWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRLGEETGHG
HHHHHHHCCCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDRVIAAQVYLRICELGSLSAAARALGMSRPMVSRYLEQMESWAGARLIHRSTRRLTLTP
CCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
AGEKVLIKTRCLTRIADEIAGERQRADPSGTLRVACAHFTAMQLISPLLPDFLARYPLLR
CCCEEEHHHHHHHHHHHHHCCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCEEE
LELDINNHPVSLIGERIDVAIRITDNPEAGAIARRLGVCRSLLCAAPRWMRQHGPLTTPD
EEEECCCCCHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHH
DLQRHNCLLYSHFASQHWQFSDAQGREASVAVNGNLSAGISSLLLEAAVAGCGIAMLPEL
HHHHCCEEEEEHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCH
EARSAIASGTLEVVLPEWTPKALSVYGIYLSRDYQPDGLPLFLDALQRRLGEETGHG
HHHHHHHCCCEEEEECCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]