Click here to switch to the map view.

The map label for this gene is pecT [H]

Identifier: 238894838

GI number: 238894838

Start: 2721684

End: 2722709

Strand: Direct

Name: pecT [H]

Synonym: KP1_2854

Alternate gene names: 238894838

Gene position: 2721684-2722709 (Clockwise)

Preceding gene: 238894837

Following gene: 238894843

Centisome position: 51.86

GC content: 63.45

Gene sequence:

>1026_bases
ATGTCCTTATCGGCTTTTTTTATTTCTTTCCGCACCGCTAATGCTCTCTTCGCAGGGCCCGTTGACCCCTGCCTCTCGCG
ATGCCACAGTATTATCCCGAGAATAACGACGTTCAGGATAAACGTCCTGAAAATGGGGATAATGATGGAGAAACGCTTAC
CAGGGCTGGATCTCGACGCCCTGCGCAGCTTTGTGACCGGCATGGAGTGCGGCAGTTTCGCCCAGGCAGCGCTGCGCCTG
TCGCGTTCCACCTCCGCGGTCAGCGCCCAGCTTAAAAAGCTGGAGAGCCAGTGCGGTACGGCGCTGGTGACCAAACAGGG
GCGGCATCTGGTGCTCACCGCGGAAGGCGAAAAGCTGTTGAGCTACGCCAGACGCCTGCTGGCGCTCAATGATGAAACCC
TGCGCGCGCTGCAGGGTGAGCGGCTCACCGGCGAGATCCACCTTGGTATGCAGGAAGATTTTGGCGAATCGCTGATGCCG
GGGATCCTCGGGCAATTTAAACGGCATCATCCGCAGGTGCGGATAGTCGCCAGGGTGGATCGCAATGGTCCGCTGCGCCA
GGCGCTGGCGGAAGAGGCGCTGGATCTGGCGCTGCTGTGGCAAACCGAAGATCAGGGTCCCGGGCTGGGCCTCTGCCCGC
TGGCGTGGATTGCGCATCCTGACCTGGATATTCGCGCTCTGCTGGTCTCCGGCGAGCCGCTGCCGCTGGTGATGTTCGAC
AGCCCGTGCCTGATGCGCTCCCGCGCCATTGCCTGTCTCGATGCCGCGGGGATCCCCTGGCAGGTGGTGTTCGTCAGCCA
CAGCCTGAGCGGCATCTGGGCGGCGGTGCAGGCCGGGCTGGGCCTGACGATACGCACCCGCATCGGCATGCCAGGCAACC
TGCGCCCTGCAGGAGGACTGCTGCCAGCGCCAGGAAGTCTGGCCGTCAGCCTGCGACAAACCCCGCGTGAGGAATCGCAT
TCCGCCGCCGTGGCGCTGCTCGGCGAACTGATGACCGAGGCCCTGCAGGGATGGCTCGACAGGTGA

Upstream 100 bases:

>100_bases
CTGGTGGAGCGCACCGCTCAGGAGCTGCTGGCGCAATAACCTGCCTTAGCGAGGCGGCGCCTGCCGCCCCGCTGTCAGCC
TTGCCTGCAATAAGCCGATA

Downstream 100 bases:

>100_bases
CACTGTCACGCCATCCCTGCGCGCTCGTGTAGGCCGGGCAAGCGCAGCGCCGCCCGGCAACAGGCACAAGAGATGAACGG
AACCATCCGGCAGTCACCGG

Product: NADH dehydrogenase transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSLSAFFISFRTANALFAGPVDPCLSRCHSIIPRITTFRINVLKMGIMMEKRLPGLDLDALRSFVTGMECGSFAQAALRL
SRSTSAVSAQLKKLESQCGTALVTKQGRHLVLTAEGEKLLSYARRLLALNDETLRALQGERLTGEIHLGMQEDFGESLMP
GILGQFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTEDQGPGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFD
SPCLMRSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTIRTRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREESH
SAAVALLGELMTEALQGWLDR

Sequences:

>Translated_341_residues
MSLSAFFISFRTANALFAGPVDPCLSRCHSIIPRITTFRINVLKMGIMMEKRLPGLDLDALRSFVTGMECGSFAQAALRL
SRSTSAVSAQLKKLESQCGTALVTKQGRHLVLTAEGEKLLSYARRLLALNDETLRALQGERLTGEIHLGMQEDFGESLMP
GILGQFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTEDQGPGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFD
SPCLMRSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTIRTRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREESH
SAAVALLGELMTEALQGWLDR
>Mature_340_residues
SLSAFFISFRTANALFAGPVDPCLSRCHSIIPRITTFRINVLKMGIMMEKRLPGLDLDALRSFVTGMECGSFAQAALRLS
RSTSAVSAQLKKLESQCGTALVTKQGRHLVLTAEGEKLLSYARRLLALNDETLRALQGERLTGEIHLGMQEDFGESLMPG
ILGQFKRHHPQVRIVARVDRNGPLRQALAEEALDLALLWQTEDQGPGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFDS
PCLMRSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTIRTRIGMPGNLRPAGGLLPAPGSLAVSLRQTPREESHS
AAVALLGELMTEALQGWLDR

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=34.2412451361868, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787806, Length=261, Percent_Identity=25.2873563218391, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788748, Length=282, Percent_Identity=28.7234042553192, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082132, Length=262, Percent_Identity=24.8091603053435, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367136, Length=159, Percent_Identity=30.8176100628931, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=31.8181818181818, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36934; Mature: 36803

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSAFFISFRTANALFAGPVDPCLSRCHSIIPRITTFRINVLKMGIMMEKRLPGLDLDA
CCCCEEEEEEECCCCEECCCHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHCCCCCCHHH
LRSFVTGMECGSFAQAALRLSRSTSAVSAQLKKLESQCGTALVTKQGRHLVLTAEGEKLL
HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCHHHH
SYARRLLALNDETLRALQGERLTGEIHLGMQEDFGESLMPGILGQFKRHHPQVRIVARVD
HHHHHHHHCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
RNGPLRQALAEEALDLALLWQTEDQGPGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFD
CCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEEC
SPCLMRSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTIRTRIGMPGNLRPAGGL
CCHHHHHHHHHEEECCCCCEEEEEEECCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
LPAPGSLAVSLRQTPREESHSAAVALLGELMTEALQGWLDR
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLSAFFISFRTANALFAGPVDPCLSRCHSIIPRITTFRINVLKMGIMMEKRLPGLDLDA
CCCEEEEEEECCCCEECCCHHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHCCCCCCHHH
LRSFVTGMECGSFAQAALRLSRSTSAVSAQLKKLESQCGTALVTKQGRHLVLTAEGEKLL
HHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEECCCCEEEEEECCHHHH
SYARRLLALNDETLRALQGERLTGEIHLGMQEDFGESLMPGILGQFKRHHPQVRIVARVD
HHHHHHHHCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
RNGPLRQALAEEALDLALLWQTEDQGPGLGLCPLAWIAHPDLDIRALLVSGEPLPLVMFD
CCCHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHHHCCCCCCEEEEEECCCCEEEEEEC
SPCLMRSRAIACLDAAGIPWQVVFVSHSLSGIWAAVQAGLGLTIRTRIGMPGNLRPAGGL
CCHHHHHHHHHEEECCCCCEEEEEEECCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
LPAPGSLAVSLRQTPREESHSAAVALLGELMTEALQGWLDR
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]