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The map label for this gene is yhjC [H]

Identifier: 238894774

GI number: 238894774

Start: 2656191

End: 2657096

Strand: Direct

Name: yhjC [H]

Synonym: KP1_2783

Alternate gene names: 238894774

Gene position: 2656191-2657096 (Clockwise)

Preceding gene: 238894772

Following gene: 238894776

Centisome position: 50.61

GC content: 52.76

Gene sequence:

>906_bases
ATGGATCTCTTCTCAGCAATGCGCATATTTATCAGGGTGGTTGAACGGGGCAGCATGTCGGCTGCAGCCCGCGATCTCGG
TATTGGCCAGCCCGCCGTGAGTGAAAGAATAGAAAAACTGGAAGCTCATCTTGGGACACGTTTGCTTAGGCGCAACACGC
GTAACATGTCTCTAACGCAAAGCGGTAACGTGTTTTATGAGCGAAGCAAAACGGCCGTTCAGGCGGCAGAGCATGCTCTT
TCTGTGAATGAGGAAAATCAGGGGCTGCAAGGCAAAATCCGTATTGCCGCGCCCTATTCCGCCGGAGAAAGCTTGCTGAT
GCCTGCATTGTTGCAGCTTCAGAACGAGCATCCGGCGCTGCAGGTCGATGTCATTTTTAACGACCGCGTCATCGATCCCG
TCACCGAGGGGGTCGATTTATCACTGAGATTAGGTGATGTCTCCGAAGGTTTTTTTGTCGCACGCCCGCTTGGCACCGTG
CGCAGAGTGTTACTGGCCTCTCCGGCTCTGCTGGCGAAAATGGGTCATCCTGACACGCCGGATGCGCTGACAGATTATCC
ATTTGCTGCTGTTTCCGGTGTATTCGCCAGTAATCGCATTCAATTGGTCGCTTCCGAAGATCAACTCATTAATGTTCCCG
TCAATATTCAATTTCAGTCCACGCACTGGCGGAGTGTCCTCTCCTGGTTATTAGCGGGACATGCCATTGGTGTTTTGCAA
AGTCCGGTTTGCAGAAAAGAAATGGCAGACGGCGCGCTCATCCCCCTCTTAAGCCACTATCCGATCCCGCCATTTAGTGC
CTGGTTGCTCCATCCACCAGTTGGGATGATGTCGTATGAAACGCGAATTTGTGCCTCCCTGCTGGAGGGCTATATCAGAG
ATTTGTTGCTTGAGCCGGCCGGCTGA

Upstream 100 bases:

>100_bases
CTGACTCAGGCCTTGAGTCTGGATTTTTCATCATTTCGCAGTAAAGCAGTAGATACCTATCCCCACTTACATTTATCGGT
AAAGCCAATATAATTGGTGA

Downstream 100 bases:

>100_bases
ATAAAACAGCGCTGCCCTGGCGCGCTGAAGATGGCCTCTTGTTAATGACTCAATCTCTGATGCATGAAATCAATAAGCGC
TCTTGTTTTTGCCGGCAAGT

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQSGNVFYERSKTAVQAAEHAL
SVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPALQVDVIFNDRVIDPVTEGVDLSLRLGDVSEGFFVARPLGTV
RRVLLASPALLAKMGHPDTPDALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
SPVCRKEMADGALIPLLSHYPIPPFSAWLLHPPVGMMSYETRICASLLEGYIRDLLLEPAG

Sequences:

>Translated_301_residues
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQSGNVFYERSKTAVQAAEHAL
SVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPALQVDVIFNDRVIDPVTEGVDLSLRLGDVSEGFFVARPLGTV
RRVLLASPALLAKMGHPDTPDALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
SPVCRKEMADGALIPLLSHYPIPPFSAWLLHPPVGMMSYETRICASLLEGYIRDLLLEPAG
>Mature_301_residues
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQSGNVFYERSKTAVQAAEHAL
SVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPALQVDVIFNDRVIDPVTEGVDLSLRLGDVSEGFFVARPLGTV
RRVLLASPALLAKMGHPDTPDALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
SPVCRKEMADGALIPLLSHYPIPPFSAWLLHPPVGMMSYETRICASLLEGYIRDLLLEPAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=310, Percent_Identity=31.2903225806452, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI1786401, Length=263, Percent_Identity=30.7984790874525, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=29.2096219931272, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789440, Length=308, Percent_Identity=27.5974025974026, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=25.3378378378378, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787128, Length=184, Percent_Identity=30.4347826086957, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1788748, Length=246, Percent_Identity=27.6422764227642, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788297, Length=137, Percent_Identity=30.6569343065693, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787589, Length=270, Percent_Identity=23.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=27.0114942528736, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788706, Length=143, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32937; Mature: 32937

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQ
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
SGNVFYERSKTAVQAAEHALSVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPAL
CCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCE
QVDVIFNDRVIDPVTEGVDLSLRLGDVSEGFFVARPLGTVRRVLLASPALLAKMGHPDTP
EEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHCCHHHHHCCCCCCC
DALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
CHHHCCCHHHHHHHHCCCEEEEEECCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHHC
SPVCRKEMADGALIPLLSHYPIPPFSAWLLHPPVGMMSYETRICASLLEGYIRDLLLEPA
CCHHHHHHCCCCEEHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
G
C
>Mature Secondary Structure
MDLFSAMRIFIRVVERGSMSAAARDLGIGQPAVSERIEKLEAHLGTRLLRRNTRNMSLTQ
CCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
SGNVFYERSKTAVQAAEHALSVNEENQGLQGKIRIAAPYSAGESLLMPALLQLQNEHPAL
CCCEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCE
QVDVIFNDRVIDPVTEGVDLSLRLGDVSEGFFVARPLGTVRRVLLASPALLAKMGHPDTP
EEEEEECCCCCCCCCCCCEEEEEECCCCCCEEEECCHHHHHHHHHHCCHHHHHCCCCCCC
DALTDYPFAAVSGVFASNRIQLVASEDQLINVPVNIQFQSTHWRSVLSWLLAGHAIGVLQ
CHHHCCCHHHHHHHHCCCEEEEEECCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHHHC
SPVCRKEMADGALIPLLSHYPIPPFSAWLLHPPVGMMSYETRICASLLEGYIRDLLLEPA
CCHHHHHHCCCCEEHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]