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The map label for this gene is rbsC [H]

Identifier: 238894768

GI number: 238894768

Start: 2650603

End: 2651613

Strand: Direct

Name: rbsC [H]

Synonym: KP1_2776

Alternate gene names: 238894768

Gene position: 2650603-2651613 (Clockwise)

Preceding gene: 238894767

Following gene: 238894769

Centisome position: 50.5

GC content: 59.55

Gene sequence:

>1011_bases
ATGAGTATCATGAATTTAAGCAGCTCACGCATGATCCAGCATTCGCTGCCGCGCCGCCTGCTGCATAACCATTCAGGCGT
AGTCAGCATCGCGCTCTTTTTCGTCTTCTGCTGCGTGGTGTTTTCGCTGATCACCAGCAACTTTCTCACCGGCACCAACT
GGCTCAACATTATCCGTCAGAGCGCCCCGCTGCTGATCGTCGCGACGGCAATGACTCTGGTCATTACCACCGGCGGTATC
GATCTGTCGGTAGGCTCCACCCTGGCGCTGGTCGGCGCGCTCTCCGCTATCGCCCTGAATAGCTGGGGTCTGCCGTGGCC
GGTGGTACTCCTCGGCGGCCTGCTGCTAGGCGGATTCGTTGGCGCCATCAACGGCTTCTTTATTGCCTATGAAGGCATTC
CGGCGTTTATCGTCACGCTCGCCACCCTGGCCGTAGTTCGCGGCATCGCGCTGCTGGTCACCCAGGGCTACTCGATTCCG
GTGCCGGCTGACAGCCTGTTTACCTTTATCGGACGCGCGTGGGTCGTCGGGATCCCCATGCCCGCACTGCTCGGCATTCT
GATTCTGCTGATCGGGCATATCGTTCTCAACCATATGCGCTTTGGCCGCTACGTGACCGCCATCGGCGCTAACGCCGAAG
GCGCGCGGCGCAGCGGCATTAACACCAAAGCGGTCACCATGAAGGTCTATATCATCAGCGGAATGGCCGCCGCGCTGGCG
GGGATGATCATTACCGCACGCCTCGGCAGCGGCTCCTCCAACCAGGGCGAAGGCTTTGAACTGCAGGTCATTGCTGCCGT
TGTGCTAGGCAGCACCAGTCTGTTTGGCGGCTTCGGAACTATTATTGGCACGCTGCTGGGCGCACTGTCGATTGCGGTCA
TTCAGAACGGGCTGATCCTGTCGCATATTTCGCCGTTTTACACCCAGATAGCCACCGGCACCATTATCCTGCTGGCTATC
TGGCTGAACACCCGCATTCTCAACCCGACGCGCTCCGCGGCAAAAGGATAG

Upstream 100 bases:

>100_bases
CGACAGACGGGTGTCCGACACCAGCCTGAGCGATATCGTTAACCTGATTGTGGGCGAAAAATTCACCGCCCGCTCTGCGG
CAGCACATTGAGGTAACAGG

Downstream 100 bases:

>100_bases
CTGATGAAAGGATCAATTTTTCGCCATCCCTCCCCGCTGCCGGTTGGCGTTAGCAGCGGTTATGTAATGACTGTGCTTGG
CCCACTGCCGATTAACGAAA

Product: putative ribose/xylose/arabinose/galactoside ABC-type transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MSIMNLSSSRMIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGI
DLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIP
VPADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALA
GMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAI
WLNTRILNPTRSAAKG

Sequences:

>Translated_336_residues
MSIMNLSSSRMIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGI
DLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIP
VPADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALA
GMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAI
WLNTRILNPTRSAAKG
>Mature_335_residues
SIMNLSSSRMIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQSAPLLIVATAMTLVITTGGID
LSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFVGAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPV
PADSLFTFIGRAWVVGIPMPALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALAG
MIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLILSHISPFYTQIATGTIILLAIW
LNTRILNPTRSAAKG

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=35.5345911949685, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1790191, Length=293, Percent_Identity=39.9317406143345, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1789992, Length=360, Percent_Identity=33.0555555555556, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1790524, Length=285, Percent_Identity=37.5438596491228, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI145693152, Length=314, Percent_Identity=33.7579617834395, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI87082395, Length=325, Percent_Identity=34.4615384615385, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI145693214, Length=256, Percent_Identity=35.546875, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787793, Length=274, Percent_Identity=35.4014598540146, Blast_Score=104, Evalue=7e-24,
Organism=Escherichia coli, GI1787794, Length=283, Percent_Identity=31.4487632508834, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788471, Length=325, Percent_Identity=31.6923076923077, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35066; Mature: 34935

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIMNLSSSRMIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQ
CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFV
CCCEEEHHHHHHHHHEECCCEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
GAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVVGIPM
HHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECCCH
PALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALA
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCEEEEEEEEEHHHHHHHHH
GMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLIL
HHHHEEECCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
SHISPFYTQIATGTIILLAIWLNTRILNPTRSAAKG
HHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHCCCC
>Mature Secondary Structure 
SIMNLSSSRMIQHSLPRRLLHNHSGVVSIALFFVFCCVVFSLITSNFLTGTNWLNIIRQ
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SAPLLIVATAMTLVITTGGIDLSVGSTLALVGALSAIALNSWGLPWPVVLLGGLLLGGFV
CCCEEEHHHHHHHHHEECCCEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
GAINGFFIAYEGIPAFIVTLATLAVVRGIALLVTQGYSIPVPADSLFTFIGRAWVVGIPM
HHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHEECCCH
PALLGILILLIGHIVLNHMRFGRYVTAIGANAEGARRSGINTKAVTMKVYIISGMAAALA
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCCEEEEEEEEEHHHHHHHHH
GMIITARLGSGSSNQGEGFELQVIAAVVLGSTSLFGGFGTIIGTLLGALSIAVIQNGLIL
HHHHEEECCCCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH
SHISPFYTQIATGTIILLAIWLNTRILNPTRSAAKG
HHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]