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The map label for this gene is yidP [H]

Identifier: 238894729

GI number: 238894729

Start: 2610872

End: 2611570

Strand: Direct

Name: yidP [H]

Synonym: KP1_2736

Alternate gene names: 238894729

Gene position: 2610872-2611570 (Clockwise)

Preceding gene: 238894726

Following gene: 238894731

Centisome position: 49.74

GC content: 55.79

Gene sequence:

>699_bases
GTGATTTATAAAAAGATTGCCACTGAACTGAAGGCCCGCATCAACAGCGACGACTATGCCGTCGGCGATATGCTGCCCAG
CGAAAAAGCGCTCGCCGCGGAGCTGAAGGTCTCGGTGATGACGCTGCGCAAAGCGCTGGCGCTACTGGAGGAAGAAAAGC
TGATCGCGCGGCGGCACGGCAGCGGAACCTGCATTGTGCGTAAAAGTAACTATCATGGCGGGGAACTGGAGGGCTTTAAC
TACCAGATGCAGGTGGTGGGCGTCACCAACTACCGTAACAAAGTTATTGAATTTACGCTGCTTGATGCCCCGCCAGCCAT
TGCCCAGCAGTTAAAGATCCAGCCGGGGGAGAAAGTGTATTACGTCAGACGGCTGCGGCTGATCGATGAGGTCCCAATCC
TGGTGGAAAACAGCTATATCCCCTTCGCCACCTTCCCCTGGCTCAGCGTGGGTAACCTCGAGCAGTCTAAGTTCAACTAT
TTCAAAAAAGAGTGCCATATCACCATCATCGAGAGCCACCGCAGCTATACCCCGGTGCTGGCGACCCGTGAGCAGGCGGA
GCTGCTGCAGGTGGCGCCAAACAGCCTCCTGCTGCGGGTGCAGTCGATCAGCTACGCCCAGAACCGGGCGATCGTCGATT
TCTCAGAGATCTACCAGAACACCAGTAAGTACAATGTGAAGCACATTACCCGCCGCTAG

Upstream 100 bases:

>100_bases
ATTGTTGATTTTTTCGCTGCAAGATAAAAATAATAATTTAATTACATGAAGTTATTCATGTCTACCGTTGACTGGCGCCA
CTCCATCGAGACATCTAAAA

Downstream 100 bases:

>100_bases
AGGATTCAGACCAGCCATCCCCGGGCGATCAGCTCTATCCCCAGCGCCAGCAGGAACAACAGAAAGCCCTGACGAAAGCG
CTGCGGGCTGAGACGCGAGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MIYKKIATELKARINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHGSGTCIVRKSNYHGGELEGFN
YQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVYYVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNY
FKKECHITIIESHRSYTPVLATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR

Sequences:

>Translated_232_residues
MIYKKIATELKARINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHGSGTCIVRKSNYHGGELEGFN
YQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVYYVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNY
FKKECHITIIESHRSYTPVLATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR
>Mature_232_residues
MIYKKIATELKARINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHGSGTCIVRKSNYHGGELEGFN
YQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVYYVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNY
FKKECHITIIESHRSYTPVLATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=233, Percent_Identity=43.3476394849785, Blast_Score=187, Evalue=4e-49,
Organism=Escherichia coli, GI1786950, Length=232, Percent_Identity=28.8793103448276, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI87082252, Length=227, Percent_Identity=25.1101321585903, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788418, Length=220, Percent_Identity=28.6363636363636, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790540, Length=207, Percent_Identity=28.9855072463768, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26582; Mature: 26582

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKKIATELKARINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHG
CCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGTCIVRKSNYHGGELEGFNYQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVY
CCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCHHHHHHEECCCCCEEH
YVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNYFKKECHITIIESHRSYTPVL
HHHHHHHHHCCCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCEE
ATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR
ECHHHHHHHHHCCCHHEEEEECCCHHCCCEEEEHHHHHCCCCCCCEEEECCC
>Mature Secondary Structure
MIYKKIATELKARINSDDYAVGDMLPSEKALAAELKVSVMTLRKALALLEEEKLIARRHG
CCHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SGTCIVRKSNYHGGELEGFNYQMQVVGVTNYRNKVIEFTLLDAPPAIAQQLKIQPGEKVY
CCEEEEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCHHHHHHEECCCCCEEH
YVRRLRLIDEVPILVENSYIPFATFPWLSVGNLEQSKFNYFKKECHITIIESHRSYTPVL
HHHHHHHHHCCCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHEEEEEEECCCCCCCEE
ATREQAELLQVAPNSLLLRVQSISYAQNRAIVDFSEIYQNTSKYNVKHITRR
ECHHHHHHHHHCCCHHEEEEECCCHHCCCEEEEHHHHHCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]