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The map label for this gene is yciR [C]

Identifier: 238894718

GI number: 238894718

Start: 2601453

End: 2603141

Strand: Direct

Name: yciR [C]

Synonym: KP1_2724

Alternate gene names: 238894718

Gene position: 2601453-2603141 (Clockwise)

Preceding gene: 238894714

Following gene: 238894724

Centisome position: 49.57

GC content: 54.17

Gene sequence:

>1689_bases
TTGCCACGACCGAGCCACAGAGAGCGCTGTACCATGAGTAACGATCACCTGACGGATATTGCCTATCGCCACTTTATTGA
AAGCGTTAAAGATTATGCCATCTATATGCTGAGCGCCGACGGCACGGTCATTAGCTGGAATGAGGGCGCCCGCCGGGCAA
AAGGGTACCTGAGCGACGAGATCATCGGTCGCTACTTCGGTCTCTTCTATAGCGAAGCTGAGCAACTCTCCGGTGTACCC
GCAAAAAACCTGGAAATCGCCCTGCGTAGCGGGCAGTTTGAAGGGGAAGGCTGGCGGTATCGCAAAGACGGGTCCCGATT
CTGGGCGCATGTCATGATCGATACCATCCGCGATGAGCAGAACACCCTGCTGGGTTTTGCCAAAATTACCCGCGACATTA
GTGAACAGAAGGCGATTAACGACCGCATCGCCTGGATGGCGCGCTACGATGCGTTAACCGGTTTACCCAATCGGGTGGAG
TTTTTTGAACGGGTGGAGAAGCTGATCACTGGAAATGATGCCCGCCGCTTTGCCATTTTCACGATCGATTTAGACAAATT
TAAAGAGATTAACGATCTACAGGGCCATCTGATTGGTGACCAGCTGCTGCAGCGCGTGGCGGGCGCTGTTCTCAAAACGC
TGCAGAAGGAGGAGATGGTCGCCCGCTTCGGCGGCGATGAGTTTGTGGCTGTTAAACCTTTTTCCGATGAGGGGGAAGTG
GATGCCTTTGCTGCGCGCCTGTGGCACTGCTTCAGCGGTAAGCAGACGTTTGCCGCGACGGAAGTGGTTCTCTCCGCCAG
CATTGGCATCTCAGTCTACCCGGAGGACGGCACGGATATTAATACGATACTGAGCAATTCCGATCTGGCTATGTATCGGG
CAAAAAGCAGCCTCGACCATAAGATTTGCTGGTATGAACGTGAAATGGATGACAAGACGCGGCAGCGCAATATGATGGCC
GCCGATATCCGGCGCGGTATTCACGCCGGGGAGTTTTCGCTCCACTATCAGGCTATCCGCAACATCAAAGATCGTAGCAT
CACCGGTTACGAGGCGCTGCTGCGCTGGCAGCATCCGCAGCTGGGGACGATCCCGCCGGACGTGTTTATTCCCATCGCCG
AAGAGAGCGGCGCCATCGTGCCCTTAGGTTACTGGGTGCTCGAGCAGGTGTGTAACGAATCGCTGGAAAATGGTTTGAAC
AGAAAAGTTTCGGTCAATATCTCTCCGGTGCAGTTGCGTCATCGTAGCTTTATCGAAAAAGTCCGCGAGATCCTGATGCG
TACCGCCTACCCGGTCAGTCTGCTGGAGTTTGAGGTCACCGAAACGGCGTTTGTGATCAATAAACAGCTGGCGTTCAGCG
TTTTGCATCATCTGCAAAAAATGGGGATCAGTATTGCGCTGGATGACTTTGGCACCGGTTACTCCTCCCTGAGCATGCTG
CGCGATTTTCATTTCGACGTCATCAAACTCGACCGCAGCTTTATGACAGATGTGGAGAGCAACCCTCAGGTACGCTCATT
CGTGCGAGCCATTATTTCGCTGGGCAATTCGATCAATACGCCGCTTATCGCCGAGGGGGTGGAAACAGCTGGACAACTGC
AGATCCTCGAAGAGGAGGGATGTGACGAGATGCAGGGATTTCTGTTCGGCGAGCCGGTCGATATCAAACACCTGCCCGAC
CGGCGCTGA

Upstream 100 bases:

>100_bases
GTCCGCCGCGCCTTCTGCGGTGTCCGGGTCAGAAAGAGGCCAACAAAAGGCCATATCCTTGTATTCTTAATAGGCGTAAT
TCTGCTATATCTAATGCGTT

Downstream 100 bases:

>100_bases
TGCGCCCACCCTCCGCTGGTGGGCGTAAGGGCGTTACTGATGCGCAAGCGCTGCCTGCCCGGAAAGATGCAGCAGCGCCG
AGCGCAGCGAGACCTCGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 562; Mature: 561

Protein sequence:

>562_residues
MPRPSHRERCTMSNDHLTDIAYRHFIESVKDYAIYMLSADGTVISWNEGARRAKGYLSDEIIGRYFGLFYSEAEQLSGVP
AKNLEIALRSGQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKITRDISEQKAINDRIAWMARYDALTGLPNRVE
FFERVEKLITGNDARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVAGAVLKTLQKEEMVARFGGDEFVAVKPFSDEGEV
DAFAARLWHCFSGKQTFAATEVVLSASIGISVYPEDGTDINTILSNSDLAMYRAKSSLDHKICWYEREMDDKTRQRNMMA
ADIRRGIHAGEFSLHYQAIRNIKDRSITGYEALLRWQHPQLGTIPPDVFIPIAEESGAIVPLGYWVLEQVCNESLENGLN
RKVSVNISPVQLRHRSFIEKVREILMRTAYPVSLLEFEVTETAFVINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSML
RDFHFDVIKLDRSFMTDVESNPQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEPVDIKHLPD
RR

Sequences:

>Translated_562_residues
MPRPSHRERCTMSNDHLTDIAYRHFIESVKDYAIYMLSADGTVISWNEGARRAKGYLSDEIIGRYFGLFYSEAEQLSGVP
AKNLEIALRSGQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKITRDISEQKAINDRIAWMARYDALTGLPNRVE
FFERVEKLITGNDARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVAGAVLKTLQKEEMVARFGGDEFVAVKPFSDEGEV
DAFAARLWHCFSGKQTFAATEVVLSASIGISVYPEDGTDINTILSNSDLAMYRAKSSLDHKICWYEREMDDKTRQRNMMA
ADIRRGIHAGEFSLHYQAIRNIKDRSITGYEALLRWQHPQLGTIPPDVFIPIAEESGAIVPLGYWVLEQVCNESLENGLN
RKVSVNISPVQLRHRSFIEKVREILMRTAYPVSLLEFEVTETAFVINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSML
RDFHFDVIKLDRSFMTDVESNPQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEPVDIKHLPD
RR
>Mature_561_residues
PRPSHRERCTMSNDHLTDIAYRHFIESVKDYAIYMLSADGTVISWNEGARRAKGYLSDEIIGRYFGLFYSEAEQLSGVPA
KNLEIALRSGQFEGEGWRYRKDGSRFWAHVMIDTIRDEQNTLLGFAKITRDISEQKAINDRIAWMARYDALTGLPNRVEF
FERVEKLITGNDARRFAIFTIDLDKFKEINDLQGHLIGDQLLQRVAGAVLKTLQKEEMVARFGGDEFVAVKPFSDEGEVD
AFAARLWHCFSGKQTFAATEVVLSASIGISVYPEDGTDINTILSNSDLAMYRAKSSLDHKICWYEREMDDKTRQRNMMAA
DIRRGIHAGEFSLHYQAIRNIKDRSITGYEALLRWQHPQLGTIPPDVFIPIAEESGAIVPLGYWVLEQVCNESLENGLNR
KVSVNISPVQLRHRSFIEKVREILMRTAYPVSLLEFEVTETAFVINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSMLR
DFHFDVIKLDRSFMTDVESNPQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEGCDEMQGFLFGEPVDIKHLPDR
R

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=528, Percent_Identity=33.9015151515151, Blast_Score=308, Evalue=4e-85,
Organism=Escherichia coli, GI87081921, Length=429, Percent_Identity=28.2051282051282, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=33.3333333333333, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI226510982, Length=424, Percent_Identity=27.8301886792453, Blast_Score=143, Evalue=3e-35,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=33.3333333333333, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=35, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI1787055, Length=244, Percent_Identity=34.8360655737705, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1790496, Length=232, Percent_Identity=31.8965517241379, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788849, Length=480, Percent_Identity=24.7916666666667, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1786507, Length=251, Percent_Identity=29.8804780876494, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=29.3103448275862, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87082096, Length=431, Percent_Identity=23.6658932714617, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788381, Length=224, Percent_Identity=26.7857142857143, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=180, Percent_Identity=31.6666666666667, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=31.7647058823529, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=36, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787816, Length=150, Percent_Identity=28, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=28.75, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI145693134, Length=151, Percent_Identity=33.7748344370861, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=176, Percent_Identity=30.6818181818182, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786584, Length=158, Percent_Identity=27.8481012658228, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787410, Length=162, Percent_Identity=29.0123456790123, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1788085, Length=160, Percent_Identity=25.625, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 63944; Mature: 63812

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPSHRERCTMSNDHLTDIAYRHFIESVKDYAIYMLSADGTVISWNEGARRAKGYLSDE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCEEECCCCHHHHHCCHHHH
IIGRYFGLFYSEAEQLSGVPAKNLEIALRSGQFEGEGWRYRKDGSRFWAHVMIDTIRDEQ
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHCCCH
NTLLGFAKITRDISEQKAINDRIAWMARYDALTGLPNRVEFFERVEKLITGNDARRFAIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEE
TIDLDKFKEINDLQGHLIGDQLLQRVAGAVLKTLQKEEMVARFGGDEFVAVKPFSDEGEV
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
DAFAARLWHCFSGKQTFAATEVVLSASIGISVYPEDGTDINTILSNSDLAMYRAKSSLDH
HHHHHHHHHHHCCCCHHHHHHHHHEEECCEEEECCCCCCHHHHCCCCCCEEHHHHCCCCC
KICWYEREMDDKTRQRNMMAADIRRGIHAGEFSLHYQAIRNIKDRSITGYEALLRWQHPQ
CEEEEEHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
LGTIPPDVFIPIAEESGAIVPLGYWVLEQVCNESLENGLNRKVSVNISPVQLRHRSFIEK
CCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
VREILMRTAYPVSLLEFEVTETAFVINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSML
HHHHHHHCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
RDFHFDVIKLDRSFMTDVESNPQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEG
HHHCCHHHHHCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEHHCC
CDEMQGFLFGEPVDIKHLPDRR
CHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRPSHRERCTMSNDHLTDIAYRHFIESVKDYAIYMLSADGTVISWNEGARRAKGYLSDE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCEEECCCCHHHHHCCHHHH
IIGRYFGLFYSEAEQLSGVPAKNLEIALRSGQFEGEGWRYRKDGSRFWAHVMIDTIRDEQ
HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCCHHHHHHHHHHHHCCCH
NTLLGFAKITRDISEQKAINDRIAWMARYDALTGLPNRVEFFERVEKLITGNDARRFAIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEE
TIDLDKFKEINDLQGHLIGDQLLQRVAGAVLKTLQKEEMVARFGGDEFVAVKPFSDEGEV
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
DAFAARLWHCFSGKQTFAATEVVLSASIGISVYPEDGTDINTILSNSDLAMYRAKSSLDH
HHHHHHHHHHHCCCCHHHHHHHHHEEECCEEEECCCCCCHHHHCCCCCCEEHHHHCCCCC
KICWYEREMDDKTRQRNMMAADIRRGIHAGEFSLHYQAIRNIKDRSITGYEALLRWQHPQ
CEEEEEHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCC
LGTIPPDVFIPIAEESGAIVPLGYWVLEQVCNESLENGLNRKVSVNISPVQLRHRSFIEK
CCCCCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH
VREILMRTAYPVSLLEFEVTETAFVINKQLAFSVLHHLQKMGISIALDDFGTGYSSLSML
HHHHHHHCCCCHHHEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
RDFHFDVIKLDRSFMTDVESNPQVRSFVRAIISLGNSINTPLIAEGVETAGQLQILEEEG
HHHCCHHHHHCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEHHCC
CDEMQGFLFGEPVDIKHLPDRR
CHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]