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The map label for this gene is hcpA [H]

Identifier: 238894681

GI number: 238894681

Start: 2568467

End: 2568949

Strand: Direct

Name: hcpA [H]

Synonym: KP1_2687

Alternate gene names: 238894681

Gene position: 2568467-2568949 (Clockwise)

Preceding gene: 238894680

Following gene: 238894688

Centisome position: 48.94

GC content: 41.61

Gene sequence:

>483_bases
ATGTCAAATCCAGCATATTTATGGTTAACTGATGAGAATGATTCGCCTATTATAGGTTCTTGCCTGATGCCCACACGCAC
GGGTTCCATCGAATTGCGCGCAGTGAATCATCATGTTTGGTTACCTACCGATAATAATACAGGAAAGCTGACGGGAACCC
GTCTTCATACACCGGTTAAAATTCAAAAAGAGTTTGACAGAACAACACCTTTGTTATTTAGGGCTCTTTGTGAAGGTCGA
ATATTAAGATCGGCAACGCTAAAAATGTACAGAATAAATGAGGCGGGACTGGAAGTTGAATATTTTAACATAGCGATGGC
GAATCTTAAGATTACGGCAATCACACCAAATTTACATCCGGCCGGAATGACAAGTACTCACCTTGAAGACATTGATTTCC
GTTATGAGACGATCACCTGGATATACACAGAAGGGAACATCATGTATCGTGATTCATGGAACGATCGCTGTTGTGCATGG
TAG

Upstream 100 bases:

>100_bases
CATTGCCATTAACTTAATAGGACTTTTTGTTTTATTAATCATTGGGTTTCACGTTGTCGTTTGGTTTAAAGTTAAAAACT
GATATGAAAGAGGAGGGGTA

Downstream 100 bases:

>100_bases
CAAATGATATAGTGCTGAAACGCGGCGCCTCTTGCGGCGCCGCCTGTCTCATTCATCCGCCATCTTCCCTGCGCTAAAAC
TCCAGTCCTCCAGTTGGTTA

Product: putative Hcp1 family type VI secretion system effector

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSNPAYLWLTDENDSPIIGSCLMPTRTGSIELRAVNHHVWLPTDNNTGKLTGTRLHTPVKIQKEFDRTTPLLFRALCEGR
ILRSATLKMYRINEAGLEVEYFNIAMANLKITAITPNLHPAGMTSTHLEDIDFRYETITWIYTEGNIMYRDSWNDRCCAW

Sequences:

>Translated_160_residues
MSNPAYLWLTDENDSPIIGSCLMPTRTGSIELRAVNHHVWLPTDNNTGKLTGTRLHTPVKIQKEFDRTTPLLFRALCEGR
ILRSATLKMYRINEAGLEVEYFNIAMANLKITAITPNLHPAGMTSTHLEDIDFRYETITWIYTEGNIMYRDSWNDRCCAW
>Mature_159_residues
SNPAYLWLTDENDSPIIGSCLMPTRTGSIELRAVNHHVWLPTDNNTGKLTGTRLHTPVKIQKEFDRTTPLLFRALCEGRI
LRSATLKMYRINEAGLEVEYFNIAMANLKITAITPNLHPAGMTSTHLEDIDFRYETITWIYTEGNIMYRDSWNDRCCAW

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18408; Mature: 18277

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNPAYLWLTDENDSPIIGSCLMPTRTGSIELRAVNHHVWLPTDNNTGKLTGTRLHTPVK
CCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEECEEEEEECCCCCCEEEEEEECCCEE
IQKEFDRTTPLLFRALCEGRILRSATLKMYRINEAGLEVEYFNIAMANLKITAITPNLHP
EEECCCCCHHHHHHHHHCCCEEECEEEEEEEECCCCCEEEEEEEEEEEEEEEEECCCCCC
AGMTSTHLEDIDFRYETITWIYTEGNIMYRDSWNDRCCAW
CCCCCCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SNPAYLWLTDENDSPIIGSCLMPTRTGSIELRAVNHHVWLPTDNNTGKLTGTRLHTPVK
CCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEECEEEEEECCCCCCEEEEEEECCCEE
IQKEFDRTTPLLFRALCEGRILRSATLKMYRINEAGLEVEYFNIAMANLKITAITPNLHP
EEECCCCCHHHHHHHHHCCCEEECEEEEEEEECCCCCEEEEEEEEEEEEEEEEECCCCCC
AGMTSTHLEDIDFRYETITWIYTEGNIMYRDSWNDRCCAW
CCCCCCCCCCCCEEEEEEEEEEECCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]