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The map label for this gene is ygbI [C]

Identifier: 238894666

GI number: 238894666

Start: 2556507

End: 2557268

Strand: Direct

Name: ygbI [C]

Synonym: KP1_2671

Alternate gene names: 238894666

Gene position: 2556507-2557268 (Clockwise)

Preceding gene: 238894665

Following gene: 238894668

Centisome position: 48.71

GC content: 61.29

Gene sequence:

>762_bases
ATGAAGGGATATAACCGGTTAGAGCAGATTATGGACTTCCTGAAAAGCCATAATCTGGTGACAGTCGACCAGCTGGTGGC
GGCGACCAACGCCTCGCCGGCCACCATTCGCCGCGACCTGATCAAACTCGATCAGGAAGGGGTGATCAGCCGAACGCACG
GCGGGGTGACGCTGAACCGGTTTATTCCTTCCCAGCCGACGACGCTGGAGAAAGCCCAGCGCAGTCCGCTTGAGAAGCAG
GCTATCGCCAGTGCGGCGGCAGCGCTGGTGAAAGCCGGCGACGCCATTGTGCTTGACGCCGGCACCACCATGATTGAGCT
GGCGCGGCAGATCACCCATCTGCCGCTGCGGGTGATCACCAGCGATTTACATATCGCGCTGTTCCTATCGGAATTTAAGC
AGATCGAAGTGACGATTATCGGCGGGCGCATCGATGACAGCAGCCAGTCGTGCATCGGCGATCACGGCCGCCGCCTGCTG
CAGACCATCTGGCCCGATCTCGCCTTCGTCAGCTGCAACGGCTGGGACCTTGAGAAGGGGATCACCGCCCCGACGGAGGA
AAAGGCCGCCCTGAAGCGCGATCTGATGGCCAATGCCCGGCGGCGTATCCTGCTGGCGGACAGCTCCAAATACGGCGCCT
GGTCACTGTTCAACATCGCTCCGCTGGCGTCGTTGACCGATATCGTCACCGACGCCCACCTGCCGGATAAAACCCGCGAG
GCGCTGGAGACCCTTTCCCCGCAGCTGATCATTGCCGACTGA

Upstream 100 bases:

>100_bases
GATCATGGCACTGCGTTTGATATTGCCTGGACAGGTAAAGCGAAGTCTGAGAGCATGGCAACCTCCATTGAGCTCGCCAT
GCACATCGCGCAGGAATAAC

Downstream 100 bases:

>100_bases
CTCGCAGGCTGCCGTCAGGGCAGACGGGCGATATTGGCCTTGATCACCGCGATCGACTGGCTGAACTTCGCCTGCTCTTC
GCCGGCCAGCTGCAGTTCAA

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MKGYNRLEQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGGVTLNRFIPSQPTTLEKAQRSPLEKQ
AIASAAAALVKAGDAIVLDAGTTMIELARQITHLPLRVITSDLHIALFLSEFKQIEVTIIGGRIDDSSQSCIGDHGRRLL
QTIWPDLAFVSCNGWDLEKGITAPTEEKAALKRDLMANARRRILLADSSKYGAWSLFNIAPLASLTDIVTDAHLPDKTRE
ALETLSPQLIIAD

Sequences:

>Translated_253_residues
MKGYNRLEQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGGVTLNRFIPSQPTTLEKAQRSPLEKQ
AIASAAAALVKAGDAIVLDAGTTMIELARQITHLPLRVITSDLHIALFLSEFKQIEVTIIGGRIDDSSQSCIGDHGRRLL
QTIWPDLAFVSCNGWDLEKGITAPTEEKAALKRDLMANARRRILLADSSKYGAWSLFNIAPLASLTDIVTDAHLPDKTRE
ALETLSPQLIIAD
>Mature_253_residues
MKGYNRLEQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGGVTLNRFIPSQPTTLEKAQRSPLEKQ
AIASAAAALVKAGDAIVLDAGTTMIELARQITHLPLRVITSDLHIALFLSEFKQIEVTIIGGRIDDSSQSCIGDHGRRLL
QTIWPDLAFVSCNGWDLEKGITAPTEEKAALKRDLMANARRRILLADSSKYGAWSLFNIAPLASLTDIVTDAHLPDKTRE
ALETLSPQLIIAD

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=249, Percent_Identity=32.5301204819277, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1789519, Length=249, Percent_Identity=31.7269076305221, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1789059, Length=255, Percent_Identity=33.7254901960784, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1790753, Length=249, Percent_Identity=28.1124497991968, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87082344, Length=253, Percent_Identity=28.0632411067194, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789829, Length=250, Percent_Identity=27.2, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788069, Length=232, Percent_Identity=26.2931034482759, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787540, Length=233, Percent_Identity=28.3261802575107, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1790635, Length=223, Percent_Identity=30.9417040358744, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=28.448275862069, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787063, Length=246, Percent_Identity=24.7967479674797, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27696; Mature: 27696

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGYNRLEQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGGVTLNR
CCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECCCCEEEEC
FIPSQPTTLEKAQRSPLEKQAIASAAAALVKAGDAIVLDAGTTMIELARQITHLPLRVIT
CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHH
SDLHIALFLSEFKQIEVTIIGGRIDDSSQSCIGDHGRRLLQTIWPDLAFVSCNGWDLEKG
HHHHHHHHHHHHCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
ITAPTEEKAALKRDLMANARRRILLADSSKYGAWSLFNIAPLASLTDIVTDAHLPDKTRE
CCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHH
ALETLSPQLIIAD
HHHHCCCCEEEEC
>Mature Secondary Structure
MKGYNRLEQIMDFLKSHNLVTVDQLVAATNASPATIRRDLIKLDQEGVISRTHGGVTLNR
CCHHHHHHHHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHCCCCCCEECCCCEEEEC
FIPSQPTTLEKAQRSPLEKQAIASAAAALVKAGDAIVLDAGTTMIELARQITHLPLRVIT
CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHH
SDLHIALFLSEFKQIEVTIIGGRIDDSSQSCIGDHGRRLLQTIWPDLAFVSCNGWDLEKG
HHHHHHHHHHHHCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
ITAPTEEKAALKRDLMANARRRILLADSSKYGAWSLFNIAPLASLTDIVTDAHLPDKTRE
CCCCCHHHHHHHHHHHHHHHCEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHH
ALETLSPQLIIAD
HHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]