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The map label for this gene is dmsB [H]

Identifier: 238894601

GI number: 238894601

Start: 2496245

End: 2496862

Strand: Reverse

Name: dmsB [H]

Synonym: KP1_2602

Alternate gene names: 238894601

Gene position: 2496862-2496245 (Counterclockwise)

Preceding gene: 238894602

Following gene: 238894600

Centisome position: 47.57

GC content: 60.36

Gene sequence:

>618_bases
ATGAGCACGCAATATGGATTCTTTATCGACTCCGCTCGCTGTACCGGATGCAAAACCTGCGAGCTGGCCTGTAAGGACTA
CAAGAACCTGACTCCGGAGGTCAGCTTCCGCCGGATCTATGAGTATGCCGGCGGCGACTGGCAGGAGGACAACGGCGTCT
GGCAGCAGAACGTGTTTGCCTATTACCTCTCCATCGCCTGTAACCACTGCGAAGATCCGGCCTGCACCAAGGTCTGTCCG
AGCGGCGCGATGCATAAGCGCGAAGACGGTTTTGTGGTGGTCAACGAAGAGGTATGCATTGGCTGCCGCTACTGCCATAT
GGCCTGCCCGTACGGCGCCCCGCAGTATAACGCCGACAAAGGCCATATGACCAAATGCGATGGCTGTCACGAGCGCGTCG
CCGAGGGGAAAAAGCCGATCTGCGTCGAGTCCTGCCCGCTGCGGGCGTTGGATTTCGGGCCAATTGCCGAACTGCGCGCT
AAGCACGGCCAGCTGGCCGCGGTAGCGCCGCTGCCGTCGGCGCACTTTACCCGGCCGAGTATCGTTATCAAACCTAACGC
CAATGCCCGGCCGTGTGGCGATACCACCGGTTACCTGGCGAACCCGAAGGAGGTGTGA

Upstream 100 bases:

>100_bases
TGCATGAATACCCTGACCACCCACCGCCCGTCGCCGCTGGCGAAGGGGAATCCACAGCATACCAACCTGGTCGATATCGA
GAAGGTTTAAGGAGTAAACC

Downstream 100 bases:

>100_bases
GATGGGAAACGGATGGCATGAATGGCCGCTGGTGCTGTTTACGGTGCTGAGTCAGTGCGTGGTCGGCGCGACCATCGTCA
GCGGTCTTGGCTGGCTGGCG

Product: anaerobic dimethyl sulfoxide reductase subunit B

Products: Reduced form of N-Oxide compounds [C]

Alternate protein names: DMSO reductase iron-sulfur subunit [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSTQYGFFIDSARCTGCKTCELACKDYKNLTPEVSFRRIYEYAGGDWQEDNGVWQQNVFAYYLSIACNHCEDPACTKVCP
SGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNADKGHMTKCDGCHERVAEGKKPICVESCPLRALDFGPIAELRA
KHGQLAAVAPLPSAHFTRPSIVIKPNANARPCGDTTGYLANPKEV

Sequences:

>Translated_205_residues
MSTQYGFFIDSARCTGCKTCELACKDYKNLTPEVSFRRIYEYAGGDWQEDNGVWQQNVFAYYLSIACNHCEDPACTKVCP
SGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNADKGHMTKCDGCHERVAEGKKPICVESCPLRALDFGPIAELRA
KHGQLAAVAPLPSAHFTRPSIVIKPNANARPCGDTTGYLANPKEV
>Mature_204_residues
STQYGFFIDSARCTGCKTCELACKDYKNLTPEVSFRRIYEYAGGDWQEDNGVWQQNVFAYYLSIACNHCEDPACTKVCPS
GAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNADKGHMTKCDGCHERVAEGKKPICVESCPLRALDFGPIAELRAK
HGQLAAVAPLPSAHFTRPSIVIKPNANARPCGDTTGYLANPKEV

Specific function: Electron transfer subunit of the terminal reductase during anaerobic growth on various sulfoxide and N-oxide compounds [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787122, Length=205, Percent_Identity=90.7317073170732, Blast_Score=399, Evalue=1e-112,
Organism=Escherichia coli, GI1787872, Length=205, Percent_Identity=88.2926829268293, Blast_Score=391, Evalue=1e-110,
Organism=Escherichia coli, GI1789370, Length=198, Percent_Identity=33.8383838383838, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787749, Length=164, Percent_Identity=34.1463414634146, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI226510944, Length=152, Percent_Identity=38.1578947368421, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1790326, Length=169, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1789067, Length=187, Percent_Identity=33.1550802139037, Blast_Score=90, Evalue=8e-20,
Organism=Escherichia coli, GI2367345, Length=170, Percent_Identity=32.3529411764706, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI2367245, Length=162, Percent_Identity=32.7160493827161, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787478, Length=99, Percent_Identity=40.4040404040404, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1787740, Length=99, Percent_Identity=39.3939393939394, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87082179, Length=166, Percent_Identity=32.5301204819277, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788811, Length=157, Percent_Identity=30.5732484076433, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787963, Length=156, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI87082180, Length=185, Percent_Identity=28.1081081081081, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789079, Length=111, Percent_Identity=34.2342342342342, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082114, Length=100, Percent_Identity=33, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014297 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 22600; Mature: 22469

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
10.2 %Cys+Met (Translated Protein)
8.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQYGFFIDSARCTGCKTCELACKDYKNLTPEVSFRRIYEYAGGDWQEDNGVWQQNVFA
CCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHH
YYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNADK
HHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCCEEEEEHHHEEECCCCCCCCCCCC
GHMTKCDGCHERVAEGKKPICVESCPLRALDFGPIAELRAKHGQLAAVAPLPSAHFTRPS
CCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCE
IVIKPNANARPCGDTTGYLANPKEV
EEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
STQYGFFIDSARCTGCKTCELACKDYKNLTPEVSFRRIYEYAGGDWQEDNGVWQQNVFA
CCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHH
YYLSIACNHCEDPACTKVCPSGAMHKREDGFVVVNEEVCIGCRYCHMACPYGAPQYNADK
HHHHHHHCCCCCCCHHHCCCCCCCCCCCCCEEEECCCEEEEEHHHEEECCCCCCCCCCCC
GHMTKCDGCHERVAEGKKPICVESCPLRALDFGPIAELRAKHGQLAAVAPLPSAHFTRPS
CCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCE
IVIKPNANARPCGDTTGYLANPKEV
EEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Iron-Sulfur Cluster. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-Oxide; Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

Specific reaction: Reduces Various N-Oxide And Sulfoxide Compounds Including Trimethylamine N-Oxide. [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3062312; 8905232; 9278503; 2174699; 1653010 [H]