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The map label for this gene is ywkB [H]

Identifier: 238894577

GI number: 238894577

Start: 2476652

End: 2477611

Strand: Reverse

Name: ywkB [H]

Synonym: KP1_2575

Alternate gene names: 238894577

Gene position: 2477611-2476652 (Counterclockwise)

Preceding gene: 238894578

Following gene: 238894576

Centisome position: 47.21

GC content: 58.44

Gene sequence:

>960_bases
ATGACTTATGTGATTATTCATGCTCTTGCCCCGATTTTCGTCATTATGCTGCTGGGCTTCTGGGCCGGTAAGGCCGGGAT
GGTAGATAACAAAAACGTCTCGCTGCTTAATATTTTTGTAATGGATTTTGCCTTACCCGCCACGCTGTTTAGCGCGACGG
TACAAACGCCGTGGGCCGGTATCGTCGCCCAGTCGCCGTTGGTGCTGGTGTTGACCGGCGCGATGTGGATCACCTATGCC
GCGATCTACTTCCTCGCCACCAGCGTGTTCAAACGCACGCCGCAGGATGCCGCGGTGCTGACCCTCACCGTCGCCCTGCC
AAACTATGCCGCGTTAGGTCTGCCGATCCTCGGCAGCGTACTGGGTGAAGGCGCGTCAACCTCACTGTCGGTAGCGGTCT
CTATCGCCTGCGGCTCGGTGCTGATGACCCCGTTCTGCCTGCTGATTCTGGAACGTGAAAAAGCCCGCGCCGCGGGAGAA
AACAGCGGTTCTACGCTGGCGATGCTGCCGGTGCTGATGTGGCGTTCGGTGAAAAAACCGATCGTCTGGGGCCCGCTGCT
TGGGGTGGTGCTTTCCGCGATCGGCATTAAAATGCCGGACCTGCTGCTGGCGTCGATCAAACCGCTGGGCCTGGCTGCCA
CCGCCGCCGCGCTGTTCCTCACCGGGGTGATCCTGTCGGCGCGTAAACTGCAGCTCAATGCACTGATCGCTACATCAACC
ATCGTGAAACTGCTGGTGCAGCCGTTTATTGCCTGGGGTCTGGTGATGTTACTTGGGTTGCACGGTTCCATTGCCATTAC
CGCGATCCTGATGATAGCCCTGGCCGCCGGCTTCTTCGGCGTGGTCTTCGGCAACCGCTTCGGCGTACAGTCTCCGGATG
CTGAAGCCGTGCTGCTGTTGAGCTCGGTTCTGTGTATCCTGTCGCTACCGCTGTTTATCTCTTTGACTTCAGGACTGTAA

Upstream 100 bases:

>100_bases
GAAGCCGTCCCCCGGAGCGCGTAATAACCGCGCCGGGTAGGGACGGCTTTTAGAAAAAATAACAATCGCGCCAGTACTCT
ATCTTATTTACAGGTGATTT

Downstream 100 bases:

>100_bases
ACCATGTCAGCAACGCCGCGTCCCCACGATTTAGTTTGGTTAAACCACGCCAGCGCCCTGGAAGACATTGCCGAGCCGTG
GGTGGCTCAGCAGTGGCGAG

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTYVIIHALAPIFVIMLLGFWAGKAGMVDNKNVSLLNIFVMDFALPATLFSATVQTPWAGIVAQSPLVLVLTGAMWITYA
AIYFLATSVFKRTPQDAAVLTLTVALPNYAALGLPILGSVLGEGASTSLSVAVSIACGSVLMTPFCLLILEREKARAAGE
NSGSTLAMLPVLMWRSVKKPIVWGPLLGVVLSAIGIKMPDLLLASIKPLGLAATAAALFLTGVILSARKLQLNALIATST
IVKLLVQPFIAWGLVMLLGLHGSIAITAILMIALAAGFFGVVFGNRFGVQSPDAEAVLLLSSVLCILSLPLFISLTSGL

Sequences:

>Translated_319_residues
MTYVIIHALAPIFVIMLLGFWAGKAGMVDNKNVSLLNIFVMDFALPATLFSATVQTPWAGIVAQSPLVLVLTGAMWITYA
AIYFLATSVFKRTPQDAAVLTLTVALPNYAALGLPILGSVLGEGASTSLSVAVSIACGSVLMTPFCLLILEREKARAAGE
NSGSTLAMLPVLMWRSVKKPIVWGPLLGVVLSAIGIKMPDLLLASIKPLGLAATAAALFLTGVILSARKLQLNALIATST
IVKLLVQPFIAWGLVMLLGLHGSIAITAILMIALAAGFFGVVFGNRFGVQSPDAEAVLLLSSVLCILSLPLFISLTSGL
>Mature_318_residues
TYVIIHALAPIFVIMLLGFWAGKAGMVDNKNVSLLNIFVMDFALPATLFSATVQTPWAGIVAQSPLVLVLTGAMWITYAA
IYFLATSVFKRTPQDAAVLTLTVALPNYAALGLPILGSVLGEGASTSLSVAVSIACGSVLMTPFCLLILEREKARAAGEN
SGSTLAMLPVLMWRSVKKPIVWGPLLGVVLSAIGIKMPDLLLASIKPLGLAATAAALFLTGVILSARKLQLNALIATSTI
VKLLVQPFIAWGLVMLLGLHGSIAITAILMIALAAGFFGVVFGNRFGVQSPDAEAVLLLSSVLCILSLPLFISLTSGL

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

Organism=Escherichia coli, GI1788715, Length=315, Percent_Identity=28.8888888888889, Blast_Score=111, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776
- InterPro:   IPR014024 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 33331; Mature: 33200

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYVIIHALAPIFVIMLLGFWAGKAGMVDNKNVSLLNIFVMDFALPATLFSATVQTPWAG
CCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
IVAQSPLVLVLTGAMWITYAAIYFLATSVFKRTPQDAAVLTLTVALPNYAALGLPILGSV
HHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
LGEGASTSLSVAVSIACGSVLMTPFCLLILEREKARAAGENSGSTLAMLPVLMWRSVKKP
HCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
IVWGPLLGVVLSAIGIKMPDLLLASIKPLGLAATAAALFLTGVILSARKLQLNALIATST
CHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVKLLVQPFIAWGLVMLLGLHGSIAITAILMIALAAGFFGVVFGNRFGVQSPDAEAVLLL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
SSVLCILSLPLFISLTSGL
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TYVIIHALAPIFVIMLLGFWAGKAGMVDNKNVSLLNIFVMDFALPATLFSATVQTPWAG
CEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHH
IVAQSPLVLVLTGAMWITYAAIYFLATSVFKRTPQDAAVLTLTVALPNYAALGLPILGSV
HHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
LGEGASTSLSVAVSIACGSVLMTPFCLLILEREKARAAGENSGSTLAMLPVLMWRSVKKP
HCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
IVWGPLLGVVLSAIGIKMPDLLLASIKPLGLAATAAALFLTGVILSARKLQLNALIATST
CHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVKLLVQPFIAWGLVMLLGLHGSIAITAILMIALAAGFFGVVFGNRFGVQSPDAEAVLLL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
SSVLCILSLPLFISLTSGL
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]