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The map label for this gene is ydbJ [H]

Identifier: 238894466

GI number: 238894466

Start: 2361371

End: 2361634

Strand: Direct

Name: ydbJ [H]

Synonym: KP1_2456

Alternate gene names: 238894466

Gene position: 2361371-2361634 (Clockwise)

Preceding gene: 238894460

Following gene: 238894470

Centisome position: 44.99

GC content: 66.29

Gene sequence:

>264_bases
ATGCGAGCTGCGATGTTAGTAGGATGTGCGGCGCTGTTGCTGTCCGCGTGCAGTAGTGAACCCGTTCAGCAGGCCACGGC
GGCGCACGTCACGCCGGGAATGCGGGCGGCGATGAGCGACGCCGGTCAGGCCAACTGCGCCATGATAGGCGGCTCGTTAT
CGGTGGCTCGTCAGCTCGATGGTTCGGCGATTGGCATGTGCGCGCTGCCGAACGGCAAACGCTGCAGCGAGCAGGCGCTG
GCGGGCGGCAGCTGCGGCTACTAA

Upstream 100 bases:

>100_bases
ATGAGGCGCATAAATACGTACTTCCCCTCTCGACGCCGCCCGCCACGCTGCCTATTATTCTGGGGTTTGCTTTTTTAAGA
CGTTTCCGAGGGGAGAGAGA

Downstream 100 bases:

>100_bases
CAGCGGCCCCGTCGCGGGGCAGCGTCAGCGGCACCTCAACGCCGGCTAGTGCATCAGGTCGGCGAGCTTATAGACCAGCG
TCTGGTCGGCGGTCGCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MRAAMLVGCAALLLSACSSEPVQQATAAHVTPGMRAAMSDAGQANCAMIGGSLSVARQLDGSAIGMCALPNGKRCSEQAL
AGGSCGY

Sequences:

>Translated_87_residues
MRAAMLVGCAALLLSACSSEPVQQATAAHVTPGMRAAMSDAGQANCAMIGGSLSVARQLDGSAIGMCALPNGKRCSEQAL
AGGSCGY
>Mature_87_residues
MRAAMLVGCAALLLSACSSEPVQQATAAHVTPGMRAAMSDAGQANCAMIGGSLSVARQLDGSAIGMCALPNGKRCSEQAL
AGGSCGY

Specific function: Unknown

COG id: COG3042

COG function: function code R; Putative hemolysin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081894, Length=86, Percent_Identity=86.046511627907, Blast_Score=150, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005590 [H]

Pfam domain/function: PF03891 DUF333 [H]

EC number: NA

Molecular weight: Translated: 8547; Mature: 8547

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.9 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
13.8 %Cys+Met (Translated Protein)
6.9 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
13.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAAMLVGCAALLLSACSSEPVQQATAAHVTPGMRAAMSDAGQANCAMIGGSLSVARQLD
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCHHHHHHCC
GSAIGMCALPNGKRCSEQALAGGSCGY
CCEEEEEECCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MRAAMLVGCAALLLSACSSEPVQQATAAHVTPGMRAAMSDAGQANCAMIGGSLSVARQLD
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCCEEEECCCHHHHHHCC
GSAIGMCALPNGKRCSEQALAGGSCGY
CCEEEEEECCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]