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The map label for this gene is yagA [C]

Identifier: 238894421

GI number: 238894421

Start: 2314169

End: 2314939

Strand: Direct

Name: yagA [C]

Synonym: KP1_2406

Alternate gene names: 238894421

Gene position: 2314169-2314939 (Clockwise)

Preceding gene: 238894420

Following gene: 238894422

Centisome position: 44.09

GC content: 53.05

Gene sequence:

>771_bases
ATATTGTCGTTGAGCAGGACGGTATTTCGTTATCAGCCTGATACGCAACGTGATGAGCCAGTCATTATGGCGCTGACCGT
GGCGGCTGAACGCTATCCGCGATACGGATTTGAAAAGCTTTTTCATGTGCTGCGCAGGCAGGGCAAAAGCTGGAACCATA
AGCGCGTTCACCGGATTTACTGCCTGCTGAAACTGAATTTTCGCCGTAAGGGAAAACAGCGCCTGCCAGTGCGCAATCCG
GTTCCGCTGGTGACGCCAGAGGCGATGAACCAGAGCAGGTCCATCGATTTTATGCACGATGCGCTGGTGTGCGGCAGACG
CTTCCGGACCTTCAACGTGGTGGATGATTTTAACCGCGAAGCACTGGCGCTCGAAATTGACCTGAATATCCCGGCGCAGC
GGGTCGTGAGAGTGCTGGACAGGATCGTGGCAAACCGCGGATATCCGCTAAAGATGCGGATGGATAACGGTCCGGAACTG
GTCTCGCTGACGCTGGCACAATGGGCAGAAGAGCATGGTGTGATGCTGGATTTTATCAGGCCCGGCAAGCCAACGCAGAA
TGCCTTTATCGAACGGTTCAACCGGACATACAGAACAGAAATACTGGATTTTTATCTGTTCAGAACACTGAATAAAGCAC
GGGAAATTACAGAGCGCTGGCTGGCTGAATATAACGGCGAGCGCCCCCACGAATCCCTGAATAACCTGACGCCGGAAGAA
TACCGGCTGATGGCTGAAACCCCGGAAATCTCAAAAAGTGCGTGGAACTAA

Upstream 100 bases:

>100_bases
AAGACGTTATTGAAAAAAAGCTTTAAAACCAGCGATAAAGCGTGAGCTGGTCAGCTATCTGACCGCGCAGTTTGCCATGA
GCTTACGTCAGGCATGCAGT

Downstream 100 bases:

>100_bases
AACGGGTGCGCTTACACCAGGAGATTCTCTATCAAAAATTGCCAAACGTTATAAGACAAGCACTGATGAAATTGCCAAAA
ACAATAATATAAAAGATGTG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLSLSRTVFRYQPDTQRDEPVIMALTVAAERYPRYGFEKLFHVLRRQGKSWNHKRVHRIYCLLKLNFRRKGKQRLPVRNP
VPLVTPEAMNQSRSIDFMHDALVCGRRFRTFNVVDDFNREALALEIDLNIPAQRVVRVLDRIVANRGYPLKMRMDNGPEL
VSLTLAQWAEEHGVMLDFIRPGKPTQNAFIERFNRTYRTEILDFYLFRTLNKAREITERWLAEYNGERPHESLNNLTPEE
YRLMAETPEISKSAWN

Sequences:

>Translated_256_residues
MLSLSRTVFRYQPDTQRDEPVIMALTVAAERYPRYGFEKLFHVLRRQGKSWNHKRVHRIYCLLKLNFRRKGKQRLPVRNP
VPLVTPEAMNQSRSIDFMHDALVCGRRFRTFNVVDDFNREALALEIDLNIPAQRVVRVLDRIVANRGYPLKMRMDNGPEL
VSLTLAQWAEEHGVMLDFIRPGKPTQNAFIERFNRTYRTEILDFYLFRTLNKAREITERWLAEYNGERPHESLNNLTPEE
YRLMAETPEISKSAWN
>Mature_256_residues
MLSLSRTVFRYQPDTQRDEPVIMALTVAAERYPRYGFEKLFHVLRRQGKSWNHKRVHRIYCLLKLNFRRKGKQRLPVRNP
VPLVTPEAMNQSRSIDFMHDALVCGRRFRTFNVVDDFNREALALEIDLNIPAQRVVRVLDRIVANRGYPLKMRMDNGPEL
VSLTLAQWAEEHGVMLDFIRPGKPTQNAFIERFNRTYRTEILDFYLFRTLNKAREITERWLAEYNGERPHESLNNLTPEE
YRLMAETPEISKSAWN

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=238, Percent_Identity=26.0504201680672, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789981, Length=230, Percent_Identity=25.6521739130435, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 30393; Mature: 30393

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLSRTVFRYQPDTQRDEPVIMALTVAAERYPRYGFEKLFHVLRRQGKSWNHKRVHRIY
CCCCCCHHEEECCCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
CLLKLNFRRKGKQRLPVRNPVPLVTPEAMNQSRSIDFMHDALVCGRRFRTFNVVDDFNRE
EEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCEECHHHCCCCC
ALALEIDLNIPAQRVVRVLDRIVANRGYPLKMRMDNGPELVSLTLAQWAEEHGVMLDFIR
EEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEC
PGKPTQNAFIERFNRTYRTEILDFYLFRTLNKAREITERWLAEYNGERPHESLNNLTPEE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHH
YRLMAETPEISKSAWN
HEEECCCCCCCCCCCC
>Mature Secondary Structure
MLSLSRTVFRYQPDTQRDEPVIMALTVAAERYPRYGFEKLFHVLRRQGKSWNHKRVHRIY
CCCCCCHHEEECCCCCCCCCEEEEEEHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
CLLKLNFRRKGKQRLPVRNPVPLVTPEAMNQSRSIDFMHDALVCGRRFRTFNVVDDFNRE
EEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCEECHHHCCCCC
ALALEIDLNIPAQRVVRVLDRIVANRGYPLKMRMDNGPELVSLTLAQWAEEHGVMLDFIR
EEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEC
PGKPTQNAFIERFNRTYRTEILDFYLFRTLNKAREITERWLAEYNGERPHESLNNLTPEE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHHH
YRLMAETPEISKSAWN
HEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]