| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
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The map label for this gene is yijO [C]
Identifier: 238894356
GI number: 238894356
Start: 2247231
End: 2249552
Strand: Reverse
Name: yijO [C]
Synonym: KP1_2338
Alternate gene names: 238894356
Gene position: 2249552-2247231 (Counterclockwise)
Preceding gene: 238894359
Following gene: 238894354
Centisome position: 42.86
GC content: 64.56
Gene sequence:
>2322_bases GTGGAGCAGCATTCAGGCGACTTTAGCGTCACCGTACGCGATGTGCGTCAGCTGACCCAGCAGGAAAGCGATCTGCTGAC GCTGCTGTGGGTGCTGGAGGGAAGCGTAAATCTGGCGGTGGCGGAAGGTGCGTCGCAGCCGCTCGTCGCCGACGGGCTGG CGATCGTTAACCGCAACCGTCGCTGGAGCCTGCGCAGCGCCGGGGCCAACGCCGTGATGATCCTCACCCTCTCCGCCAGC TGGCTGGCCCGCCTCGATAATGCCTTTTTTGCCGTCGATTACCAGATAACGCCGCGCACCCGGGATGCCGATGACGGCCT GCGTCGCCTGATGCGCCAGCTGCTGGTGAGCGGCCTGGTCAATCATCCTGGCCATTACCGACTGGAGGCCAACCGCTGGC TGAGTGAGATAGCGCTGCTGCTGGCCACGCGCTTTAGCCAGCCCATCGCCTCCACGCCCCGGCGCGATACCGAAAAATGG AGCCGGAGAATAGCCAGCGTGGTGGCGCGGATCGACGCTAACTATCAGCGTCGCCTCTCGTTGCAGGAGGTGGCGGCCGC GGAATTTGTCTCCGAGGCCTGGCTGTCACGCTTATTTCGCAAAGAGGTCGGGGTAAGTTTTGTCCAGTACCTCACCGCGC TGCGCCTGCGCCACGCCGCCGACCAGCTATTAACCACCCGCAAAACCGTCCAGCAAATCGCCCGCGAACAGGGATTCGCC AGTACGCGAATGATGAGCGATTTGTTTAAGCGCCAGCACGGCGTGACGCCGCGCCAGTATCGTGAACAGCATCCTCTGGA GCTTGCCCGACCGCGCCCGCCGCAGGCCGATCGCTGGCAGCCGGTGGCGGCCGACCGGCTGTATGCGCGACTCAATGAGC CGGAACCACGCGACCGGGAAAGTCCCCCCCTGCCGATCAACCCACCGCAGACCCGGGAGATCAATCTGCGCGATCGTCCA GCGCGCCCCGTAGCGCTGCGCCATACCCGGATGGTGGTGACCGTGCGCGAACTGGACGATCTGCTGCGCGAAGATGTGCG CCGGGAACTCGAACAGCTGCACCACGCCCTGCCGGTGTATGCCATCGATATCAACGATCCCTTTCTCAGCAGTCGGCTGT TCGGCACCGGCTGGGACGATCCGCAGATGGCCGGCTACGCCTGCTGGTACAACCTGCAGCAGATTTTTAGCTGGCTGGCG GCGATGGGCTGGCAGGTGATCCTGCACACCGGCGTCACCACCCGCAGTGACCTGCTGCAGCGCTTCCTGCAGCTCGCCGC CAACCATTTTCCGCCAGCCACGCTCAACAGCTGGCGCTTTGTCTGGCACTGGTCGCCGCAGGCCAGCGAAGCTGCGCGCC AGGCCGCCTGGCGGCAGCAGCGCGGGGTCCTTCATCGCCTGCTGCCGCAGCCGCAGCTGGGGATCTGGCACCGCTTTGCT CCCAGCGATCCCGGGAACGATCCGCTGTTCCACTCGCCGCTGCTGGCAGAGGCGGATTTTCTCGCCTGCCAGGCAGATGC CAACGAACAGCTGGATCTGGCCCAGGTTGACAGCAGCCGCCTGGCCTCCAGTGAACATTATCCGCTGCACAAGTTGCGGC AGATCCACAGCGCCCTGCGCCAGCGTCAGCTCAACCTGCCGCTGTGGCTGCTCTCCTGGAATACGCTGACCGGCGATACG CGGGATACCAACGGCCGCTTTTTTCGCGGCGCGCTGCTGATGGATAATCTGCTGGGGGTGGCGGACCAGGTCTGGCTGGC GGGCTTCTGGTTAAATTCAGGCCTCCAGGGCGAAGCTCGCGCCAACGGCAAGCTCGATACCTCCAGCCTGGCGCTGCACT ATCTGCACGGCCTGCCGCGCCCGGTTTACTGGGTACTCTGGCTCTGGCGGCGGCTGCGCGGCGAGATCTTGGTTCACGAT AAAAACCTGCTGCTGCTCCACCACCAGGGTCACTACCAGCTGCTGCTGCGCAATACGGTGGTCTACAATCCCTGGCTCTC CAGCGAAGCGGCCTTTATCCAGCGCTTCAGCCAGCCCTACAGCGTGCGGCTGCAGGGCCTGGATGGCAGCTGGCGCATCA AACAGCACCTGTTCGATCAGCACCACGGCGCGTTGTTCCCGCTGGTGGACGCCTTTCGCAGCCGCAGCGGCCCTGACGCC GAGGATTATCAGTGGCTGATGCATCAGGCCCGTCCGGCGCTCAGCGTGGATGAAGCCAGGCTCGATGGCTATTGGCTGCG GATCGACTCGCTGCAGAGCAATGCGCTGGTGCTGTATGAATTTACCCCTCAGCTCTCCTCCGGCGCGGATCCCGCCCCCT GA
Upstream 100 bases:
>100_bases TTTTTTGTTTTATATTGACGAAAAATCAATGAGTGTTTTTCATACATATCGGTTATGACAAAAAACAACCGGTTGTTTTT TGTCTACAGAGGAGAGCCAT
Downstream 100 bases:
>100_bases AGTAAACCGTGAATTTTCCGCTGGCTCTCCGTCGTTGCCGGATTAAAGACCAGCAGGGAAAGATCGGGACGGCCCTCCAC GGCAAAGGAGGTAAATTCCA
Product: putative helix-turn-helix AraC-type transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 773; Mature: 773
Protein sequence:
>773_residues MEQHSGDFSVTVRDVRQLTQQESDLLTLLWVLEGSVNLAVAEGASQPLVADGLAIVNRNRRWSLRSAGANAVMILTLSAS WLARLDNAFFAVDYQITPRTRDADDGLRRLMRQLLVSGLVNHPGHYRLEANRWLSEIALLLATRFSQPIASTPRRDTEKW SRRIASVVARIDANYQRRLSLQEVAAAEFVSEAWLSRLFRKEVGVSFVQYLTALRLRHAADQLLTTRKTVQQIAREQGFA STRMMSDLFKRQHGVTPRQYREQHPLELARPRPPQADRWQPVAADRLYARLNEPEPRDRESPPLPINPPQTREINLRDRP ARPVALRHTRMVVTVRELDDLLREDVRRELEQLHHALPVYAIDINDPFLSSRLFGTGWDDPQMAGYACWYNLQQIFSWLA AMGWQVILHTGVTTRSDLLQRFLQLAANHFPPATLNSWRFVWHWSPQASEAARQAAWRQQRGVLHRLLPQPQLGIWHRFA PSDPGNDPLFHSPLLAEADFLACQADANEQLDLAQVDSSRLASSEHYPLHKLRQIHSALRQRQLNLPLWLLSWNTLTGDT RDTNGRFFRGALLMDNLLGVADQVWLAGFWLNSGLQGEARANGKLDTSSLALHYLHGLPRPVYWVLWLWRRLRGEILVHD KNLLLLHHQGHYQLLLRNTVVYNPWLSSEAAFIQRFSQPYSVRLQGLDGSWRIKQHLFDQHHGALFPLVDAFRSRSGPDA EDYQWLMHQARPALSVDEARLDGYWLRIDSLQSNALVLYEFTPQLSSGADPAP
Sequences:
>Translated_773_residues MEQHSGDFSVTVRDVRQLTQQESDLLTLLWVLEGSVNLAVAEGASQPLVADGLAIVNRNRRWSLRSAGANAVMILTLSAS WLARLDNAFFAVDYQITPRTRDADDGLRRLMRQLLVSGLVNHPGHYRLEANRWLSEIALLLATRFSQPIASTPRRDTEKW SRRIASVVARIDANYQRRLSLQEVAAAEFVSEAWLSRLFRKEVGVSFVQYLTALRLRHAADQLLTTRKTVQQIAREQGFA STRMMSDLFKRQHGVTPRQYREQHPLELARPRPPQADRWQPVAADRLYARLNEPEPRDRESPPLPINPPQTREINLRDRP ARPVALRHTRMVVTVRELDDLLREDVRRELEQLHHALPVYAIDINDPFLSSRLFGTGWDDPQMAGYACWYNLQQIFSWLA AMGWQVILHTGVTTRSDLLQRFLQLAANHFPPATLNSWRFVWHWSPQASEAARQAAWRQQRGVLHRLLPQPQLGIWHRFA PSDPGNDPLFHSPLLAEADFLACQADANEQLDLAQVDSSRLASSEHYPLHKLRQIHSALRQRQLNLPLWLLSWNTLTGDT RDTNGRFFRGALLMDNLLGVADQVWLAGFWLNSGLQGEARANGKLDTSSLALHYLHGLPRPVYWVLWLWRRLRGEILVHD KNLLLLHHQGHYQLLLRNTVVYNPWLSSEAAFIQRFSQPYSVRLQGLDGSWRIKQHLFDQHHGALFPLVDAFRSRSGPDA EDYQWLMHQARPALSVDEARLDGYWLRIDSLQSNALVLYEFTPQLSSGADPAP >Mature_773_residues MEQHSGDFSVTVRDVRQLTQQESDLLTLLWVLEGSVNLAVAEGASQPLVADGLAIVNRNRRWSLRSAGANAVMILTLSAS WLARLDNAFFAVDYQITPRTRDADDGLRRLMRQLLVSGLVNHPGHYRLEANRWLSEIALLLATRFSQPIASTPRRDTEKW SRRIASVVARIDANYQRRLSLQEVAAAEFVSEAWLSRLFRKEVGVSFVQYLTALRLRHAADQLLTTRKTVQQIAREQGFA STRMMSDLFKRQHGVTPRQYREQHPLELARPRPPQADRWQPVAADRLYARLNEPEPRDRESPPLPINPPQTREINLRDRP ARPVALRHTRMVVTVRELDDLLREDVRRELEQLHHALPVYAIDINDPFLSSRLFGTGWDDPQMAGYACWYNLQQIFSWLA AMGWQVILHTGVTTRSDLLQRFLQLAANHFPPATLNSWRFVWHWSPQASEAARQAAWRQQRGVLHRLLPQPQLGIWHRFA PSDPGNDPLFHSPLLAEADFLACQADANEQLDLAQVDSSRLASSEHYPLHKLRQIHSALRQRQLNLPLWLLSWNTLTGDT RDTNGRFFRGALLMDNLLGVADQVWLAGFWLNSGLQGEARANGKLDTSSLALHYLHGLPRPVYWVLWLWRRLRGEILVHD KNLLLLHHQGHYQLLLRNTVVYNPWLSSEAAFIQRFSQPYSVRLQGLDGSWRIKQHLFDQHHGALFPLVDAFRSRSGPDA EDYQWLMHQARPALSVDEARLDGYWLRIDSLQSNALVLYEFTPQLSSGADPAP
Specific function: Unknown
COG id: COG3664
COG function: function code G; Beta-xylosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR009057 - InterPro: IPR012287 - InterPro: IPR003313 - InterPro: IPR020449 - InterPro: IPR018060 [H]
Pfam domain/function: PF00165 HTH_AraC [H]
EC number: NA
Molecular weight: Translated: 88793; Mature: 88793
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: PS01124 HTH_ARAC_FAMILY_2 ; PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQHSGDFSVTVRDVRQLTQQESDLLTLLWVLEGSVNLAVAEGASQPLVADGLAIVNRNR CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCHHHCCCCC RWSLRSAGANAVMILTLSASWLARLDNAFFAVDYQITPRTRDADDGLRRLMRQLLVSGLV CEEHHCCCCCEEEEEEECHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH NHPGHYRLEANRWLSEIALLLATRFSQPIASTPRRDTEKWSRRIASVVARIDANYQRRLS CCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH LQEVAAAEFVSEAWLSRLFRKEVGVSFVQYLTALRLRHAADQLLTTRKTVQQIAREQGFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH STRMMSDLFKRQHGVTPRQYREQHPLELARPRPPQADRWQPVAADRLYARLNEPEPRDRE HHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC SPPLPINPPQTREINLRDRPARPVALRHTRMVVTVRELDDLLREDVRRELEQLHHALPVY CCCCCCCCCCCCEECCCCCCCCCEEEEHHEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEE AIDINDPFLSSRLFGTGWDDPQMAGYACWYNLQQIFSWLAAMGWQVILHTGVTTRSDLLQ EEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHH RFLQLAANHFPPATLNSWRFVWHWSPQASEAARQAAWRQQRGVLHRLLPQPQLGIWHRFA HHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC PSDPGNDPLFHSPLLAEADFLACQADANEQLDLAQVDSSRLASSEHYPLHKLRQIHSALR CCCCCCCCCCCCCHHHCCHHEEEECCCCCCCCHHHCCHHHHCCCCCCCHHHHHHHHHHHH QRQLNLPLWLLSWNTLTGDTRDTNGRFFRGALLMDNLLGVADQVWLAGFWLNSGLQGEAR HHCCCCCEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC ANGKLDTSSLALHYLHGLPRPVYWVLWLWRRLRGEILVHDKNLLLLHHQGHYQLLLRNTV CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEECCE VYNPWLSSEAAFIQRFSQPYSVRLQGLDGSWRIKQHLFDQHHGALFPLVDAFRSRSGPDA EECCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH EDYQWLMHQARPALSVDEARLDGYWLRIDSLQSNALVLYEFTPQLSSGADPAP HHHHHHHHHCCCCCCCCHHHCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC >Mature Secondary Structure MEQHSGDFSVTVRDVRQLTQQESDLLTLLWVLEGSVNLAVAEGASQPLVADGLAIVNRNR CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHCCHHHCCCCC RWSLRSAGANAVMILTLSASWLARLDNAFFAVDYQITPRTRDADDGLRRLMRQLLVSGLV CEEHHCCCCCEEEEEEECHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH NHPGHYRLEANRWLSEIALLLATRFSQPIASTPRRDTEKWSRRIASVVARIDANYQRRLS CCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH LQEVAAAEFVSEAWLSRLFRKEVGVSFVQYLTALRLRHAADQLLTTRKTVQQIAREQGFA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH STRMMSDLFKRQHGVTPRQYREQHPLELARPRPPQADRWQPVAADRLYARLNEPEPRDRE HHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC SPPLPINPPQTREINLRDRPARPVALRHTRMVVTVRELDDLLREDVRRELEQLHHALPVY CCCCCCCCCCCCEECCCCCCCCCEEEEHHEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEE AIDINDPFLSSRLFGTGWDDPQMAGYACWYNLQQIFSWLAAMGWQVILHTGVTTRSDLLQ EEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHH RFLQLAANHFPPATLNSWRFVWHWSPQASEAARQAAWRQQRGVLHRLLPQPQLGIWHRFA HHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECC PSDPGNDPLFHSPLLAEADFLACQADANEQLDLAQVDSSRLASSEHYPLHKLRQIHSALR CCCCCCCCCCCCCHHHCCHHEEEECCCCCCCCHHHCCHHHHCCCCCCCHHHHHHHHHHHH QRQLNLPLWLLSWNTLTGDTRDTNGRFFRGALLMDNLLGVADQVWLAGFWLNSGLQGEAR HHCCCCCEEEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC ANGKLDTSSLALHYLHGLPRPVYWVLWLWRRLRGEILVHDKNLLLLHHQGHYQLLLRNTV CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEECCE VYNPWLSSEAAFIQRFSQPYSVRLQGLDGSWRIKQHLFDQHHGALFPLVDAFRSRSGPDA EECCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCH EDYQWLMHQARPALSVDEARLDGYWLRIDSLQSNALVLYEFTPQLSSGADPAP HHHHHHHHHCCCCCCCCHHHCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12044378 [H]