Click here to switch to the map view.

The map label for this gene is ycfQ [H]

Identifier: 238894145

GI number: 238894145

Start: 2046103

End: 2046738

Strand: Reverse

Name: ycfQ [H]

Synonym: KP1_2102

Alternate gene names: 238894145

Gene position: 2046738-2046103 (Counterclockwise)

Preceding gene: 238894146

Following gene: 238894144

Centisome position: 39.0

GC content: 59.43

Gene sequence:

>636_bases
ATGACAACTGACGTTCAAAGTTGCGCCAAAAAAAGCCGTGGCCGACCGAAGGTGTTCGACAGGGATGCGGCGCTGGACAA
AGCCATGACACTCTTCTGGCAGCACGGCTATGAGGCGACCTCGCTCGCCGATCTGGTCGAGGCGACAGGAGCAAAAGCCC
CCACCCTGTATGCGGAATTTGTGAATAAAGAAGGCCTATTCCGCGCAGTGTTGGATCGTTACATTTCGCGCTTTGCCGCG
AAGCACGAAGCCGTGCTGTTTGCCGAGGGAAAATCCGTCGATCGCGCGTTGCGTGACTACTTCACGGCGGTCGCCACCTG
CTTTACCAGCAAAGAGACGCCGGCCGGCTGCTTTATCATCAATACCTCCGCCGCGCTGGCCGCCTCCTCGACGGATATCG
CCAATACCATCAAATCCCGCCATGCGATGCAGGAGCAGGCGCTAACCCAGTTTCTGCAGCAGCGGCAGGCGCAGGGCGAA
CTGCCCGCGGGCCGCGATGTCGCGCAGCTGGCGCAATTTCTTAACTGCGTTCTGCAGGGGATGTCGATTAGCGCCCGGGA
AGGCGCGGATTTCGACAAGCTGATGCAAATCACCGATACCACTCTCCGTCTCTGGCCGCAGGTCCTCGAGTCCTGA

Upstream 100 bases:

>100_bases
CATATATGAATTATTTATTTTTAAACCGACAGCGCTGGCCCCGGCGATCGTTTATTTTTATAATGGCCTTTCACCAAACC
AACATAGGTACAACGGCACC

Downstream 100 bases:

>100_bases
TGCGCCCTGCTTCCGGCGGTATTCTGCCGCCGGATCCGCTCTCCTGTTGGCTTTATCCCCACAAAATAGATTGATTTTTA
TTACCTTTTCTCGCGCAAGA

Product: putative TetR/AcrR-family trancriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTTDVQSCAKKSRGRPKVFDRDAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFVNKEGLFRAVLDRYISRFAA
KHEAVLFAEGKSVDRALRDYFTAVATCFTSKETPAGCFIINTSAALAASSTDIANTIKSRHAMQEQALTQFLQQRQAQGE
LPAGRDVAQLAQFLNCVLQGMSISAREGADFDKLMQITDTTLRLWPQVLES

Sequences:

>Translated_211_residues
MTTDVQSCAKKSRGRPKVFDRDAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFVNKEGLFRAVLDRYISRFAA
KHEAVLFAEGKSVDRALRDYFTAVATCFTSKETPAGCFIINTSAALAASSTDIANTIKSRHAMQEQALTQFLQQRQAQGE
LPAGRDVAQLAQFLNCVLQGMSISAREGADFDKLMQITDTTLRLWPQVLES
>Mature_210_residues
TTDVQSCAKKSRGRPKVFDRDAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFVNKEGLFRAVLDRYISRFAAK
HEAVLFAEGKSVDRALRDYFTAVATCFTSKETPAGCFIINTSAALAASSTDIANTIKSRHAMQEQALTQFLQQRQAQGEL
PAGRDVAQLAQFLNCVLQGMSISAREGADFDKLMQITDTTLRLWPQVLES

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=210, Percent_Identity=75.7142857142857, Blast_Score=337, Evalue=3e-94,
Organism=Escherichia coli, GI87082397, Length=188, Percent_Identity=29.7872340425532, Blast_Score=76, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23224; Mature: 23092

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDVQSCAKKSRGRPKVFDRDAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEF
CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHH
VNKEGLFRAVLDRYISRFAAKHEAVLFAEGKSVDRALRDYFTAVATCFTSKETPAGCFII
HCCCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
NTSAALAASSTDIANTIKSRHAMQEQALTQFLQQRQAQGELPAGRDVAQLAQFLNCVLQG
ECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
MSISAREGADFDKLMQITDTTLRLWPQVLES
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TTDVQSCAKKSRGRPKVFDRDAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEF
CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHH
VNKEGLFRAVLDRYISRFAAKHEAVLFAEGKSVDRALRDYFTAVATCFTSKETPAGCFII
HCCCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
NTSAALAASSTDIANTIKSRHAMQEQALTQFLQQRQAQGELPAGRDVAQLAQFLNCVLQG
ECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
MSISAREGADFDKLMQITDTTLRLWPQVLES
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]