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The map label for this gene is ymdB [H]

Identifier: 238894096

GI number: 238894096

Start: 1996146

End: 1996691

Strand: Direct

Name: ymdB [H]

Synonym: KP1_2047

Alternate gene names: 238894096

Gene position: 1996146-1996691 (Clockwise)

Preceding gene: 238894095

Following gene: 238894097

Centisome position: 38.03

GC content: 60.44

Gene sequence:

>546_bases
ATGCCGACAGGAGGAGAAATGGCTGTTAAACCTGAGGTAATTCTCGGCGATATTACGACACTTGATGTCGATGTGATTGT
TAATGCGGCAAATCCCTCGCTGCTGGGTGGTGGCGGAGTAGACGGGGCCATCCACCGGGCGGCCGGTCCCGCGCTGCTGG
CGGCTTGCAAGCAGGTGCTGCAGCAGCAGGGCGAATGCCCTCCCGGGCATGCGGTAATTACTATTGCCGGCAATCTGCCG
GCCAGCGCGGTGATCCACACCGTGGGCCCGGTCTGGCACGGCGGCGACCGCATGGAGGCGCAAACCCTGGCCGATGCTTA
CAAAAACAGTCTGCAGTTGGCCTCGGCAAACAACTATCGCTCCATTGCGTTTCCGGCGATAAGCACCGGCGTGTATGGCT
ATCCGAGAGAGGAAGCGGCGGCGATCGCCGTGCGCACCGTCACCGCGTTTCTCACTCGCTATAATCCTCTTGAGCGCGTC
CTGTTCGTCTGTTTTGACGAGGAAACGGCGGCTATTTATCGCCGCCTGCTGGCGTCATACCCCTGA

Upstream 100 bases:

>100_bases
GGGTCCTGTTTTTTTATCTTCTCGTCACCGGACAAAGCGATAATCTTGCTCCCGCAGGCGAGAATGCCCTAGTATCGGCA
GAAAGCCGTATCCACACGCT

Downstream 100 bases:

>100_bases
TTCAACAGAATAGGCTATGATAACCGCCAGTCTTGACGGGAATGATGGGTAGCAGGAGGGAGCAGGGTGTCAGAAGGAAA
AGTCCAGCAGAAACAGCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MPTGGEMAVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGNLP
ASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLASANNYRSIAFPAISTGVYGYPREEAAAIAVRTVTAFLTRYNPLERV
LFVCFDEETAAIYRRLLASYP

Sequences:

>Translated_181_residues
MPTGGEMAVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGNLP
ASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLASANNYRSIAFPAISTGVYGYPREEAAAIAVRTVTAFLTRYNPLERV
LFVCFDEETAAIYRRLLASYP
>Mature_180_residues
PTGGEMAVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVLQQQGECPPGHAVITIAGNLPA
SAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLASANNYRSIAFPAISTGVYGYPREEAAAIAVRTVTAFLTRYNPLERVL
FVCFDEETAAIYRRLLASYP

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=167, Percent_Identity=50.8982035928144, Blast_Score=166, Evalue=8e-42,
Organism=Homo sapiens, GI13569840, Length=177, Percent_Identity=46.8926553672316, Blast_Score=140, Evalue=8e-34,
Organism=Homo sapiens, GI154813199, Length=132, Percent_Identity=46.2121212121212, Blast_Score=111, Evalue=3e-25,
Organism=Homo sapiens, GI20336746, Length=172, Percent_Identity=31.3953488372093, Blast_Score=97, Evalue=6e-21,
Organism=Homo sapiens, GI207450721, Length=167, Percent_Identity=38.3233532934132, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI8923143, Length=167, Percent_Identity=38.3233532934132, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI93141020, Length=167, Percent_Identity=28.1437125748503, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI4758496, Length=167, Percent_Identity=28.1437125748503, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI93141018, Length=167, Percent_Identity=28.1437125748503, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI226371718, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371716, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371714, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371712, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371710, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI226371706, Length=164, Percent_Identity=31.0975609756098, Blast_Score=78, Evalue=4e-15,
Organism=Homo sapiens, GI8923920, Length=166, Percent_Identity=27.710843373494, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI165377137, Length=162, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1787283, Length=171, Percent_Identity=69.5906432748538, Blast_Score=246, Evalue=7e-67,
Organism=Caenorhabditis elegans, GI17538214, Length=171, Percent_Identity=46.7836257309941, Blast_Score=130, Evalue=5e-31,
Organism=Drosophila melanogaster, GI24586353, Length=139, Percent_Identity=34.5323741007194, Blast_Score=74, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19001; Mature: 18870

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTGGEMAVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVL
CCCCCCEEECCCEEECCCEEEEEEEEEECCCCCEECCCCCCCHHHHHCCHHHHHHHHHHH
QQQGECPPGHAVITIAGNLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLASANNYR
HHCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCC
SIAFPAISTGVYGYPREEAAAIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY
EEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCHHHHHHHHHHHCC
P
C
>Mature Secondary Structure 
PTGGEMAVKPEVILGDITTLDVDVIVNAANPSLLGGGGVDGAIHRAAGPALLAACKQVL
CCCCCEEECCCEEECCCEEEEEEEEEECCCCCEECCCCCCCHHHHHCCHHHHHHHHHHH
QQQGECPPGHAVITIAGNLPASAVIHTVGPVWHGGDRMEAQTLADAYKNSLQLASANNYR
HHCCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCEEEECCCCCC
SIAFPAISTGVYGYPREEAAAIAVRTVTAFLTRYNPLERVLFVCFDEETAAIYRRLLASY
EEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHEEEEEECCHHHHHHHHHHHCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]