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The map label for this gene is ybjD [H]

Identifier: 238893939

GI number: 238893939

Start: 1816317

End: 1817975

Strand: Direct

Name: ybjD [H]

Synonym: KP1_1877

Alternate gene names: 238893939

Gene position: 1816317-1817975 (Clockwise)

Preceding gene: 238893933

Following gene: 238893940

Centisome position: 34.61

GC content: 59.43

Gene sequence:

>1659_bases
ATGCTTCTTGAGCGCGTAGAAATCGTCGGTTTTCGCGGTATCAATCGTTTGTCGTTGATGCTGGAGCAAAATAACGTCCT
GATCGGGGAGAACGCGTGGGGGAAGTCCAGTCTGCTTGATGCGCTGACCCTGCTTTTGTCGCCGGAGTTCGATCTTTATC
ACTTTGTTCGCGATGATTTCTGGTTTCCCCCGGGCGACATCCAGGGGCGCGAACACCATTTGCATATTATCCTGACCTTC
CGCGAAACGGAGCCAGGCCGCCATCGGGTCCGGCGTTTCCGTCCGCTTCAGCGCTGCTGGGTGCCTTGCGATGACGGGTA
TCACCGGGTGTTCTATCGCCTGGAGGGCGAGCTCGCCGAAGATGACAGCGTGATGACCCTGCGGAGCTTTATCGATGGTG
AAGGCGAAGCGTTGGTGCTGGAGGAGATTGATGAGCTGGCCCGACACCTGGTGCGTTTGATGCCGGTGCTGCGCCTGCGC
GATGCGCGCTTTATGCGCCGCATCCATAACGGGACGGTACCGCACTCGCCGCAGATAGAGATCACCGCCCGTCAGCTGGA
TTTTCTCTCCCGCGAACTGGTCAGCCATCCGCAAAATTTATCGGACGGTCAGATCCGTCAGGGGCTATCGGCCATGGTGC
AACTGCTTGAGCATTACTTTGCCGAGCAAAGCAGCGCTCAGACGCGGCATCGCCTGATGCGGCGGCGCTCCCATGATGAA
CAGCGCAGTTGGCGTTATCTGGATATTATCAACCGGATGATCGACAAGCCCGGCGGGCGCAGCCATCGGGTGATCCTGCT
GGGGCTGTTTGCCACCCTCCTGCAGGCGAAAGGGACGGTGCGCCTCGATCGCGACGCGCGACCGCTGCTGTTGATTGAAG
ATCCCGAGACCCGTCTGCATCCGATCATGCTTTCCGTCGCCTGGCACCTGCTGAATTTGTTGCCGCTGCAGCGTGTGACC
ACCACCAACTCCGGAGAGCTGCTGTCCCTGACGCCGGTAGAGCAGGTCTGCCGGCTGGTGCGTGAGTCGACGCGGGTATC
GGCGTGGCGGTTGGGGCCGGGCGGAATGAATGCCGAAGAGAGCCGGCGTATTGCTTTTCACATTCGCTTCAATCGCGCCT
CATCGCTCTTCGCCCGCTGCTGGCTGCTGGTGGAGGGAGAGACGGAAACCTGGGTTATCAACGAACTGGCCCGGCAGTGC
GGTCATCATTTTGATGCTGAAGGGGTTAAGGTGATCGAGTTCGCCCAGTCCGGCCTGAAGCCATTGATCAAATTTGCCCG
CCGGATGGGGATCCAGTGGCACGTGCTGGTGGACGGCGATGAGGCGGGGAAAAAATATGCCGCGACGGTACGAGGTCTGC
TTAATAACGATCGCGAGCTGGAGCGCGACCATCTGACCAGTCTGCCGGCGCTGGATATGGAACACTTTATGTATCGTCAG
GGATTTGATGACGTTTATCATCGGGTGGCGCAGATCCCGGATAATGTCCCGATGAATATGCGGCGGGTGATCACCAAAGC
CATCCATCGCTCATCCAAGCCGGACCTGGCGATTGAGGTGGCGATGGAGGCCGGCCGCCGTGGCGTGGACGCTGTGCCGA
CGCTGCTGAAGAAAATGTTCTCACGGGTGCTGTGGTTAGCCCGCGGTCGTGCCGATTAA

Upstream 100 bases:

>100_bases
GAATATGAGCCACGGATGCGATTAAGCAGAGTGTCATCTTGCCTCCGCCCTCGCTATACTGTTGATTACTGAAGGAGAGT
GGTGGTGTAGCGGAGGGGAT

Downstream 100 bases:

>100_bases
TCTCACCGCCGTCGTCATTTACGGCGGCACAAAGCTCTCCGGCAGCTAAACAAAACGTCATTGACGAGAAAAATGGGTGT
CCTGTTGCCAACGGGTTTCG

Product: putative ATP-dependent endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MLLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVRDDFWFPPGDIQGREHHLHIILTF
RETEPGRHRVRRFRPLQRCWVPCDDGYHRVFYRLEGELAEDDSVMTLRSFIDGEGEALVLEEIDELARHLVRLMPVLRLR
DARFMRRIHNGTVPHSPQIEITARQLDFLSRELVSHPQNLSDGQIRQGLSAMVQLLEHYFAEQSSAQTRHRLMRRRSHDE
QRSWRYLDIINRMIDKPGGRSHRVILLGLFATLLQAKGTVRLDRDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRVT
TTNSGELLSLTPVEQVCRLVRESTRVSAWRLGPGGMNAEESRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGVKVIEFAQSGLKPLIKFARRMGIQWHVLVDGDEAGKKYAATVRGLLNNDRELERDHLTSLPALDMEHFMYRQ
GFDDVYHRVAQIPDNVPMNMRRVITKAIHRSSKPDLAIEVAMEAGRRGVDAVPTLLKKMFSRVLWLARGRAD

Sequences:

>Translated_552_residues
MLLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVRDDFWFPPGDIQGREHHLHIILTF
RETEPGRHRVRRFRPLQRCWVPCDDGYHRVFYRLEGELAEDDSVMTLRSFIDGEGEALVLEEIDELARHLVRLMPVLRLR
DARFMRRIHNGTVPHSPQIEITARQLDFLSRELVSHPQNLSDGQIRQGLSAMVQLLEHYFAEQSSAQTRHRLMRRRSHDE
QRSWRYLDIINRMIDKPGGRSHRVILLGLFATLLQAKGTVRLDRDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRVT
TTNSGELLSLTPVEQVCRLVRESTRVSAWRLGPGGMNAEESRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGVKVIEFAQSGLKPLIKFARRMGIQWHVLVDGDEAGKKYAATVRGLLNNDRELERDHLTSLPALDMEHFMYRQ
GFDDVYHRVAQIPDNVPMNMRRVITKAIHRSSKPDLAIEVAMEAGRRGVDAVPTLLKKMFSRVLWLARGRAD
>Mature_552_residues
MLLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVRDDFWFPPGDIQGREHHLHIILTF
RETEPGRHRVRRFRPLQRCWVPCDDGYHRVFYRLEGELAEDDSVMTLRSFIDGEGEALVLEEIDELARHLVRLMPVLRLR
DARFMRRIHNGTVPHSPQIEITARQLDFLSRELVSHPQNLSDGQIRQGLSAMVQLLEHYFAEQSSAQTRHRLMRRRSHDE
QRSWRYLDIINRMIDKPGGRSHRVILLGLFATLLQAKGTVRLDRDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRVT
TTNSGELLSLTPVEQVCRLVRESTRVSAWRLGPGGMNAEESRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQC
GHHFDAEGVKVIEFAQSGLKPLIKFARRMGIQWHVLVDGDEAGKKYAATVRGLLNNDRELERDHLTSLPALDMEHFMYRQ
GFDDVYHRVAQIPDNVPMNMRRVITKAIHRSSKPDLAIEVAMEAGRRGVDAVPTLLKKMFSRVLWLARGRAD

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787102, Length=552, Percent_Identity=86.4130434782609, Blast_Score=976, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022602 [H]

Pfam domain/function: PF11398 DUF2813 [H]

EC number: NA

Molecular weight: Translated: 63908; Mature: 63908

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVRDDF
CCCCHHHHHCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHCC
WFPPGDIQGREHHLHIILTFRETEPGRHRVRRFRPLQRCWVPCDDGYHRVFYRLEGELAE
CCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHCHHHHHCCCCCCCCEEEEEEECCCCCC
DDSVMTLRSFIDGEGEALVLEEIDELARHLVRLMPVLRLRDARFMRRIHNGTVPHSPQIE
CCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
ITARQLDFLSRELVSHPQNLSDGQIRQGLSAMVQLLEHYFAEQSSAQTRHRLMRRRSHDE
EEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCH
QRSWRYLDIINRMIDKPGGRSHRVILLGLFATLLQAKGTVRLDRDARPLLLIEDPETRLH
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCHHHH
PIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEQVCRLVRESTRVSAWRLGPGGMNAEE
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCC
SRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGVKVIEFAQSGLK
CCEEEEEEEECCHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
PLIKFARRMGIQWHVLVDGDEAGKKYAATVRGLLNNDRELERDHLTSLPALDMEHFMYRQ
HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHC
GFDDVYHRVAQIPDNVPMNMRRVITKAIHRSSKPDLAIEVAMEAGRRGVDAVPTLLKKMF
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCHHHHHHHHHHH
SRVLWLARGRAD
HHHHHHHCCCCC
>Mature Secondary Structure
MLLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVRDDF
CCCCHHHHHCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHCC
WFPPGDIQGREHHLHIILTFRETEPGRHRVRRFRPLQRCWVPCDDGYHRVFYRLEGELAE
CCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHCHHHHHCCCCCCCCEEEEEEECCCCCC
DDSVMTLRSFIDGEGEALVLEEIDELARHLVRLMPVLRLRDARFMRRIHNGTVPHSPQIE
CCCHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
ITARQLDFLSRELVSHPQNLSDGQIRQGLSAMVQLLEHYFAEQSSAQTRHRLMRRRSHDE
EEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCH
QRSWRYLDIINRMIDKPGGRSHRVILLGLFATLLQAKGTVRLDRDARPLLLIEDPETRLH
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCEEEEECCCHHHH
PIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEQVCRLVRESTRVSAWRLGPGGMNAEE
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCC
SRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGVKVIEFAQSGLK
CCEEEEEEEECCHHHHHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
PLIKFARRMGIQWHVLVDGDEAGKKYAATVRGLLNNDRELERDHLTSLPALDMEHFMYRQ
HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHC
GFDDVYHRVAQIPDNVPMNMRRVITKAIHRSSKPDLAIEVAMEAGRRGVDAVPTLLKKMF
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCCCCCCHHHHHHHHHHH
SRVLWLARGRAD
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]