Click here to switch to the map view.

The map label for this gene is ybjK [H]

Identifier: 238893905

GI number: 238893905

Start: 1783140

End: 1783703

Strand: Direct

Name: ybjK [H]

Synonym: KP1_1839

Alternate gene names: 238893905

Gene position: 1783140-1783703 (Clockwise)

Preceding gene: 238893902

Following gene: 238893907

Centisome position: 33.97

GC content: 61.7

Gene sequence:

>564_bases
ATGGCCCGTAGACCAAACGATCCGCAGCGCCGCGAGCGCATCCTGCAGGCGACGCTGGATACCATCGCGGCGCACGGCAT
CCATGCGGTGACGCACCGTAAAATCGCCACCTGCGCGAATGTGCCGCTGGGATCGCTGACCTACTATTTCAGCGGCATTG
AGGCGTTAATTGAGGAGGCGTTCAGCCTGTTTACCGCCGAGATGTCGGCGCAGTATCAGCAAGGCTTCGTCGGGGTAACG
AACCGGGAACAAGCCTGCGATGCCATCGCGGATCTGATCTTCAGCGCCCAGGTGACCACGGCGCGCAATATGGAGCTGAT
GTACCAGCTGTACGCGTTCTGCAGCAGTCAGCCGGCGCTGAAGGCGGTGATGCAAAACTGGATGCGGCGCAGCCAGCAGA
CGCTGGAACAATGGTTTGCCCCCGATACCGCCCGCGGTCTCGACGCCTTTATTGAAGGGATGACCTTGCACTTTGTCACC
GACCGCGCACCGTTGTCGAAGGCGGCAATCCGCATGATGGTCGGGCAGCTGGCAGGGGAGAGGGCGCAGGAAGAGAGGCG
CTGA

Upstream 100 bases:

>100_bases
CGAGGATTGCGTCGTCATCCGTAAACGCCTTAAAGGAGAAGAGTGAAGACAACAGTAGCAAGTATGTGTACATTTGTACA
TAAACCGGAAGAGGAAAATC

Downstream 100 bases:

>100_bases
AGCGGCGTTTCACCCGGAATGGCTAAACGCAGGCAACAAAAAACCCATCAACCTTGAACCGAAGTGGCGGGGTTGATGGG
CTCCACAAAATGGGGACATC

Product: putative DeoR-type transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MARRPNDPQRRERILQATLDTIAAHGIHAVTHRKIATCANVPLGSLTYYFSGIEALIEEAFSLFTAEMSAQYQQGFVGVT
NREQACDAIADLIFSAQVTTARNMELMYQLYAFCSSQPALKAVMQNWMRRSQQTLEQWFAPDTARGLDAFIEGMTLHFVT
DRAPLSKAAIRMMVGQLAGERAQEERR

Sequences:

>Translated_187_residues
MARRPNDPQRRERILQATLDTIAAHGIHAVTHRKIATCANVPLGSLTYYFSGIEALIEEAFSLFTAEMSAQYQQGFVGVT
NREQACDAIADLIFSAQVTTARNMELMYQLYAFCSSQPALKAVMQNWMRRSQQTLEQWFAPDTARGLDAFIEGMTLHFVT
DRAPLSKAAIRMMVGQLAGERAQEERR
>Mature_186_residues
ARRPNDPQRRERILQATLDTIAAHGIHAVTHRKIATCANVPLGSLTYYFSGIEALIEEAFSLFTAEMSAQYQQGFVGVTN
REQACDAIADLIFSAQVTTARNMELMYQLYAFCSSQPALKAVMQNWMRRSQQTLEQWFAPDTARGLDAFIEGMTLHFVTD
RAPLSKAAIRMMVGQLAGERAQEERR

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787069, Length=177, Percent_Identity=68.361581920904, Blast_Score=253, Evalue=7e-69,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21036; Mature: 20905

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRPNDPQRRERILQATLDTIAAHGIHAVTHRKIATCANVPLGSLTYYFSGIEALIEEA
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
FSLFTAEMSAQYQQGFVGVTNREQACDAIADLIFSAQVTTARNMELMYQLYAFCSSQPAL
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
KAVMQNWMRRSQQTLEQWFAPDTARGLDAFIEGMTLHFVTDRAPLSKAAIRMMVGQLAGE
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHH
RAQEERR
HHHHHCC
>Mature Secondary Structure 
ARRPNDPQRRERILQATLDTIAAHGIHAVTHRKIATCANVPLGSLTYYFSGIEALIEEA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
FSLFTAEMSAQYQQGFVGVTNREQACDAIADLIFSAQVTTARNMELMYQLYAFCSSQPAL
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
KAVMQNWMRRSQQTLEQWFAPDTARGLDAFIEGMTLHFVTDRAPLSKAAIRMMVGQLAGE
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHEEECCCCCHHHHHHHHHHHHHHHH
RAQEERR
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]