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The map label for this gene is ybiS [H]

Identifier: 238893875

GI number: 238893875

Start: 1745377

End: 1746453

Strand: Reverse

Name: ybiS [H]

Synonym: KP1_1808

Alternate gene names: 238893875

Gene position: 1746453-1745377 (Counterclockwise)

Preceding gene: 238893876

Following gene: 238893870

Centisome position: 33.28

GC content: 56.08

Gene sequence:

>1077_bases
ATGCCGGACCGCGGCAGCCGAGGCGACAGGGAAAAAAATGTGATTTCGTACACATCTGATTTACCTGTTCAGCGGAATGC
ACATATAATGCGCTCCCATCTACTGTCTCAATCATTAACAAAGGCCTGTGTGGCGTTGATTTCGCACACGACATTAAAGA
CTATGAAATTATCTACACTCTTAGCGGCAGCCTTCGCCATCGTAGGCTTTTGCAATACAGCGTCTGCTGTCACCTATCCT
TTGCCAACCGATGGCAGCCGTTTGGTTGGTCAGAATCAGGTCATTACCATTCCGGATGATAACAAACAGCCGCTGGAATA
CTTCGCGGCGAAATATCAGATGGGGCTTTCCAACATGCTGGAAGCCAACCCGGGGGTGGATACTTACCTGCCGAAGGGCG
GTAGCGTCCTGAACATCCCTCAGCAGCTGATTCTGCCGGATACCGTGCATGAAGGGATCATTATCAACAGCGCGGAAATG
CGTCTGTACTACTACCCGAAAGGCACCAATACCGTGATCGTTCTGCCGATCGGCATCGGCCAGTTAGGTAAAGATACGCC
GATCAACTGGACCACCAAAGTCGAACGCAAGAAGGCCGGCCCGACCTGGACACCGACCGCCAAAATGCATGCTGAATACG
CCGCCGCCGGCAACCCGCTGCCCGCCGTCGTACCGGCCGGTCCGGATAACCCGATGGGGCTGTACGCGCTGTATATCGGC
CGTCTGTACGCCATCCACGGCACCAACGCTAACTTCGGTATCGGCCTGCGCGTGAGCCACGGCTGCGTGCGTCTGCGTAA
CGATGACATCAAATTCCTGTTTGAGAACGTGCCGGTCGGCACCCGCGTACAGTTTATCGATGAGCCGGTAAAAGCGACCA
CCGAGCCGGACGGCAGCCGTTACATCGAGGTGCACAACCCGCTGTCGACCACCGAAGCGCAGTTCCAGGGCGGCGAGATC
GTGCCGATCACCCTGACTCAGCCGGTGCAGGCAGTTACCAGCCAGTCTGATGTCGATCAGAACGTGGTTGAGCAGGCTAT
CCAGAACCGCTCCGGTATGCCGGTGCGTCTGAACTAA

Upstream 100 bases:

>100_bases
CAGAGTACCAGCTTACCGCGCCGGTTCGCGCCGCGCTGCAGGCCCGGCTGCTGGAAGAGTAACCACCCGTTACCCGCGCG
GCGAGCGATGCTTCGGCCGC

Downstream 100 bases:

>100_bases
GTTGTGCTGACAAGAAAAACGGCGGGCCTGATGCCCGCCGTTTTTTTATCGGCATTTTCCCTCGAGGCGGCTAACGCTCG
CCCGGGCTACCAAACCCTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MPDRGSRGDREKNVISYTSDLPVQRNAHIMRSHLLSQSLTKACVALISHTTLKTMKLSTLLAAAFAIVGFCNTASAVTYP
LPTDGSRLVGQNQVITIPDDNKQPLEYFAAKYQMGLSNMLEANPGVDTYLPKGGSVLNIPQQLILPDTVHEGIIINSAEM
RLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAAGNPLPAVVPAGPDNPMGLYALYIG
RLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFQGGEI
VPITLTQPVQAVTSQSDVDQNVVEQAIQNRSGMPVRLN

Sequences:

>Translated_358_residues
MPDRGSRGDREKNVISYTSDLPVQRNAHIMRSHLLSQSLTKACVALISHTTLKTMKLSTLLAAAFAIVGFCNTASAVTYP
LPTDGSRLVGQNQVITIPDDNKQPLEYFAAKYQMGLSNMLEANPGVDTYLPKGGSVLNIPQQLILPDTVHEGIIINSAEM
RLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAAGNPLPAVVPAGPDNPMGLYALYIG
RLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFQGGEI
VPITLTQPVQAVTSQSDVDQNVVEQAIQNRSGMPVRLN
>Mature_357_residues
PDRGSRGDREKNVISYTSDLPVQRNAHIMRSHLLSQSLTKACVALISHTTLKTMKLSTLLAAAFAIVGFCNTASAVTYPL
PTDGSRLVGQNQVITIPDDNKQPLEYFAAKYQMGLSNMLEANPGVDTYLPKGGSVLNIPQQLILPDTVHEGIIINSAEMR
LYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAAGNPLPAVVPAGPDNPMGLYALYIGR
LYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFQGGEIV
PITLTQPVQAVTSQSDVDQNVVEQAIQNRSGMPVRLN

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=304, Percent_Identity=90.7894736842105, Blast_Score=579, Evalue=1e-166,
Organism=Escherichia coli, GI1788299, Length=298, Percent_Identity=64.7651006711409, Blast_Score=409, Evalue=1e-115,
Organism=Escherichia coli, GI1787356, Length=282, Percent_Identity=52.8368794326241, Blast_Score=287, Evalue=7e-79,
Organism=Escherichia coli, GI1787968, Length=311, Percent_Identity=45.9807073954984, Blast_Score=242, Evalue=3e-65,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 38945; Mature: 38814

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDRGSRGDREKNVISYTSDLPVQRNAHIMRSHLLSQSLTKACVALISHTTLKTMKLSTL
CCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAAFAIVGFCNTASAVTYPLPTDGSRLVGQNQVITIPDDNKQPLEYFAAKYQMGLSNML
HHHHHHHHHHCCCCCEEEECCCCCCCEECCCCEEEECCCCCCCHHHHHHHHHHHCHHHHH
EANPGVDTYLPKGGSVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIGIG
HCCCCCCCCCCCCCCEECCCHHHCCCCCCCCCEEEECCEEEEEEEECCCCEEEEEEECCC
QLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAAGNPLPAVVPAGPDNPMGLYALYIG
CCCCCCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHEEEE
RLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDGSR
EEEEEECCCCCEEEEEEEECCEEEEECCCEEEEEECCCCCCEEEEECCCHHCCCCCCCCE
YIEVHNPLSTTEAQFQGGEIVPITLTQPVQAVTSQSDVDQNVVEQAIQNRSGMPVRLN
EEEECCCCCCCHHHCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCCCEEEC
>Mature Secondary Structure 
PDRGSRGDREKNVISYTSDLPVQRNAHIMRSHLLSQSLTKACVALISHTTLKTMKLSTL
CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAAFAIVGFCNTASAVTYPLPTDGSRLVGQNQVITIPDDNKQPLEYFAAKYQMGLSNML
HHHHHHHHHHCCCCCEEEECCCCCCCEECCCCEEEECCCCCCCHHHHHHHHHHHCHHHHH
EANPGVDTYLPKGGSVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIGIG
HCCCCCCCCCCCCCCEECCCHHHCCCCCCCCCEEEECCEEEEEEEECCCCEEEEEEECCC
QLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYAAAGNPLPAVVPAGPDNPMGLYALYIG
CCCCCCCCCCEEEEHHHCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHEEEE
RLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDGSR
EEEEEECCCCCEEEEEEEECCEEEEECCCEEEEEECCCCCCEEEEECCCHHCCCCCCCCE
YIEVHNPLSTTEAQFQGGEIVPITLTQPVQAVTSQSDVDQNVVEQAIQNRSGMPVRLN
EEEECCCCCCCHHHCCCCCEEEEEECCCHHHHHCCCCCHHHHHHHHHHCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]