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The map label for this gene is ybiF [H]

Identifier: 238893867

GI number: 238893867

Start: 1737317

End: 1738204

Strand: Reverse

Name: ybiF [H]

Synonym: KP1_1800

Alternate gene names: 238893867

Gene position: 1738204-1737317 (Counterclockwise)

Preceding gene: 238893869

Following gene: 238893866

Centisome position: 33.12

GC content: 63.18

Gene sequence:

>888_bases
ATGCCCGGTCCATCCAGAAAAGCGGCGGCATGGTTGCCGATACTGGTGATTTTAGTCGCCATGACCTCGATTCAAAGCGG
CGCATCGCTTGCTAAATCGCTGTTCCCGGTGGTCGGCGCCCCGGGCGTCACCGCCCTGCGTCTGGCGCTGGGAACGCTGA
TTCTGGTGGTGGTGTTCAAGCCATGGCGGCTACGTTTCTCCCCGGCGCAGCGCGTGCCGCTGCTACTGTACGGCCTGGCG
CTCGGGGCGATGAACTATCTCTTTTATTTATCCCTGCAGCGCATTCCGCTCGGCGTGGCGGTGGCCCTGGAGTTTACCGG
CCCGCTGGCGGTGGCGCTGTTTGGTTCGCGCCGCCCGCTGGATTTTGTCTGGGTGGCGCTGGCGATCCTCGGACTATGGT
ATCTTCTGCCGCTGGGGCAGAACGTGGCGCAGGTCGATTTAACCGGCGCGCTGTTCGCCCTCGGCGCCGGGGCGTGCTGG
GCGGTCTATATTCTGACCGGACAGCGTGCCGGTGAAGAGCATGGTCCAGCCACGGTAGCGATGGGGTCGCTCATCGCCTC
GCTGGTGTTTGTGCCGTTAGGCATGGCGCAGGCCACCGATACGCTGTGGCAGTGGTCGCTGCTGCCGCTGGGTTTGGGGA
TCGCGATTCTCTCTACCGCGCTGCCCTACTCCCTCGAGATGATGGCCCTGACGCGCTTGCCGACGCGCACCTTCGGCACG
CTGATGAGCCTTGAGCCAGCGTTAGCTGCCCTCTCCGGTATGATCTTCCTCGGTGAAACGCTGAAGCTCTCCCAGACCCT
GGCGCTCGGCGCGATCATTATCGCCTCGATGGGCGCCACGCTGACGATGCAACGGCAGAGTAAAGTCGAGCAGGTCGATA
TCAATTAA

Upstream 100 bases:

>100_bases
TTTTTTCCCCTGTTTTTTTCAACATTAGCTCAACCGCCGGCAGGTAATTCCAGTACACTGGAACTTTTACCCCTTTTGAC
AAAACCTGACAGGAGAAAGG

Downstream 100 bases:

>100_bases
CATTCTGTTACGGCGCCGGCCCGAGAGAAATCCGGGCCGTTCAGCCAAATATAAATAGCTGATATTTAAATATTTTTAAA
ATAACCAACCACTTTGCGCT

Product: threonine and homoserine efflux system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MPGPSRKAAAWLPILVILVAMTSIQSGASLAKSLFPVVGAPGVTALRLALGTLILVVVFKPWRLRFSPAQRVPLLLYGLA
LGAMNYLFYLSLQRIPLGVAVALEFTGPLAVALFGSRRPLDFVWVALAILGLWYLLPLGQNVAQVDLTGALFALGAGACW
AVYILTGQRAGEEHGPATVAMGSLIASLVFVPLGMAQATDTLWQWSLLPLGLGIAILSTALPYSLEMMALTRLPTRTFGT
LMSLEPALAALSGMIFLGETLKLSQTLALGAIIIASMGATLTMQRQSKVEQVDIN

Sequences:

>Translated_295_residues
MPGPSRKAAAWLPILVILVAMTSIQSGASLAKSLFPVVGAPGVTALRLALGTLILVVVFKPWRLRFSPAQRVPLLLYGLA
LGAMNYLFYLSLQRIPLGVAVALEFTGPLAVALFGSRRPLDFVWVALAILGLWYLLPLGQNVAQVDLTGALFALGAGACW
AVYILTGQRAGEEHGPATVAMGSLIASLVFVPLGMAQATDTLWQWSLLPLGLGIAILSTALPYSLEMMALTRLPTRTFGT
LMSLEPALAALSGMIFLGETLKLSQTLALGAIIIASMGATLTMQRQSKVEQVDIN
>Mature_294_residues
PGPSRKAAAWLPILVILVAMTSIQSGASLAKSLFPVVGAPGVTALRLALGTLILVVVFKPWRLRFSPAQRVPLLLYGLAL
GAMNYLFYLSLQRIPLGVAVALEFTGPLAVALFGSRRPLDFVWVALAILGLWYLLPLGQNVAQVDLTGALFALGAGACWA
VYILTGQRAGEEHGPATVAMGSLIASLVFVPLGMAQATDTLWQWSLLPLGLGIAILSTALPYSLEMMALTRLPTRTFGTL
MSLEPALAALSGMIFLGETLKLSQTLALGAIIIASMGATLTMQRQSKVEQVDIN

Specific function: Unknown

COG id: COG5006

COG function: function code R; Predicted permease, DMT superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI1787033, Length=295, Percent_Identity=75.9322033898305, Blast_Score=456, Evalue=1e-130,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31210; Mature: 31079

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGPSRKAAAWLPILVILVAMTSIQSGASLAKSLFPVVGAPGVTALRLALGTLILVVVFK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
PWRLRFSPAQRVPLLLYGLALGAMNYLFYLSLQRIPLGVAVALEFTGPLAVALFGSRRPL
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCEEEEEECCCCCH
DFVWVALAILGLWYLLPLGQNVAQVDLTGALFALGAGACWAVYILTGQRAGEEHGPATVA
HHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCHHEEEEEEECCCCCCCCCCHHHH
MGSLIASLVFVPLGMAQATDTLWQWSLLPLGLGIAILSTALPYSLEMMALTRLPTRTFGT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
LMSLEPALAALSGMIFLGETLKLSQTLALGAIIIASMGATLTMQRQSKVEQVDIN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCHHCCCC
>Mature Secondary Structure 
PGPSRKAAAWLPILVILVAMTSIQSGASLAKSLFPVVGAPGVTALRLALGTLILVVVFK
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
PWRLRFSPAQRVPLLLYGLALGAMNYLFYLSLQRIPLGVAVALEFTGPLAVALFGSRRPL
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCEEEEEECCCCCH
DFVWVALAILGLWYLLPLGQNVAQVDLTGALFALGAGACWAVYILTGQRAGEEHGPATVA
HHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCHHEEEEEEECCCCCCCCCCHHHH
MGSLIASLVFVPLGMAQATDTLWQWSLLPLGLGIAILSTALPYSLEMMALTRLPTRTFGT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
LMSLEPALAALSGMIFLGETLKLSQTLALGAIIIASMGATLTMQRQSKVEQVDIN
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEHHHCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]