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The map label for this gene is ybiH [H]

Identifier: 238893846

GI number: 238893846

Start: 1717672

End: 1718331

Strand: Reverse

Name: ybiH [H]

Synonym: KP1_1778

Alternate gene names: 238893846

Gene position: 1718331-1717672 (Counterclockwise)

Preceding gene: 238893847

Following gene: 238893845

Centisome position: 32.74

GC content: 57.88

Gene sequence:

>660_bases
ATGACCAGTAAAGGCGAACAGGCAAAAAATCAGCTTATCGCGGCCGCTATCGCCCAGTTTGGCGAGTACGGCCAGCACGC
CACCACCCGCGATATCGCCGCCCAGGCCGGGCAGAATATCGCCGCTATCACCTATTATTTTGGCTCGAAAGACGATCTGT
ATCTTGCCTGCGCCCAGTGGATCGCCGATTTTATCGGCGACAATTTTCGCCCGCAGGCCGAAGCGGCGGAGCACCTGCTT
GCCGGGGAAGCGCCGGATCGCCAGGCGATCCGCGACCTCATCCTTAGCGCCTGCCACAACATGATCCTGCTGCTCACCCA
GGACGATACGGTTAACTTAAGCAAATTCATTTCCCGTGAGCAGCTGGCGCCGACCGCCGCCTACCATCTGATCCACCAGC
AGGTGATTGCCCCCCTGCACCATTATCTCACCCGGCTGATTGCCGCCTGGACCGGCTGCGAAGCCAGTGATACGCAAATG
ATCCTCCATACCCACGCCCTGCTGGGCGAGGTGCTCGCTTTCCGTCTCGGGCGTGAAACTATCCTGCTGCGCACCGGCTG
GACGCAGTTTGACGCGCAAAAAACGGAACAGATTTTCGAAGTCATTACCTGTCATATCGATTTCATCCTGCATGGGTTAT
CGCAAAGGAGTTTGGGCTGA

Upstream 100 bases:

>100_bases
CTGAAAGAGGAAGGGTTCCATATTTGATCCCGGCTGGTGGACAAACCGCCAGTCGGCGCCTAAAGTTAATCAATCGATTG
ATTAACTTTTACCGAGCGCG

Downstream 100 bases:

>100_bases
TGAAAAAACCCGTCGTCGTCATTCTGCTGATCGTGATTCTTCTCGCCGCGCTGGGCGGCGGCTGGTGGTGGTACCAGAGC
AGCCGGCAGCAGCCGCTGAC

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 218

Protein sequence:

>219_residues
MTSKGEQAKNQLIAAAIAQFGEYGQHATTRDIAAQAGQNIAAITYYFGSKDDLYLACAQWIADFIGDNFRPQAEAAEHLL
AGEAPDRQAIRDLILSACHNMILLLTQDDTVNLSKFISREQLAPTAAYHLIHQQVIAPLHHYLTRLIAAWTGCEASDTQM
ILHTHALLGEVLAFRLGRETILLRTGWTQFDAQKTEQIFEVITCHIDFILHGLSQRSLG

Sequences:

>Translated_219_residues
MTSKGEQAKNQLIAAAIAQFGEYGQHATTRDIAAQAGQNIAAITYYFGSKDDLYLACAQWIADFIGDNFRPQAEAAEHLL
AGEAPDRQAIRDLILSACHNMILLLTQDDTVNLSKFISREQLAPTAAYHLIHQQVIAPLHHYLTRLIAAWTGCEASDTQM
ILHTHALLGEVLAFRLGRETILLRTGWTQFDAQKTEQIFEVITCHIDFILHGLSQRSLG
>Mature_218_residues
TSKGEQAKNQLIAAAIAQFGEYGQHATTRDIAAQAGQNIAAITYYFGSKDDLYLACAQWIADFIGDNFRPQAEAAEHLLA
GEAPDRQAIRDLILSACHNMILLLTQDDTVNLSKFISREQLAPTAAYHLIHQQVIAPLHHYLTRLIAAWTGCEASDTQMI
LHTHALLGEVLAFRLGRETILLRTGWTQFDAQKTEQIFEVITCHIDFILHGLSQRSLG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=218, Percent_Identity=80.2752293577982, Blast_Score=367, Evalue=1e-103,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24326; Mature: 24195

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSKGEQAKNQLIAAAIAQFGEYGQHATTRDIAAQAGQNIAAITYYFGSKDDLYLACAQW
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHH
IADFIGDNFRPQAEAAEHLLAGEAPDRQAIRDLILSACHNMILLLTQDDTVNLSKFISRE
HHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHH
QLAPTAAYHLIHQQVIAPLHHYLTRLIAAWTGCEASDTQMILHTHALLGEVLAFRLGRET
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE
ILLRTGWTQFDAQKTEQIFEVITCHIDFILHGLSQRSLG
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TSKGEQAKNQLIAAAIAQFGEYGQHATTRDIAAQAGQNIAAITYYFGSKDDLYLACAQW
CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHH
IADFIGDNFRPQAEAAEHLLAGEAPDRQAIRDLILSACHNMILLLTQDDTVNLSKFISRE
HHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHH
QLAPTAAYHLIHQQVIAPLHHYLTRLIAAWTGCEASDTQMILHTHALLGEVLAFRLGRET
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE
ILLRTGWTQFDAQKTEQIFEVITCHIDFILHGLSQRSLG
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]