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The map label for this gene is ybhC [H]

Identifier: 238893811

GI number: 238893811

Start: 1680901

End: 1682184

Strand: Reverse

Name: ybhC [H]

Synonym: KP1_1741

Alternate gene names: 238893811

Gene position: 1682184-1680901 (Counterclockwise)

Preceding gene: 238893818

Following gene: 238893808

Centisome position: 32.05

GC content: 60.59

Gene sequence:

>1284_bases
ATGAACACATATTCCGTTTCCCGTCTGGCGCTGGCGCTGGCCTTCGGCGTGACGCTGTCCGCCTGTAGCTCGACGCCTGC
CGATCAACAGCCCTCAACGCAGACTGCACCGGGCACTACCGCGCGTCCCATACTCAACGCCGAAGAAGCGAAAAACTTCA
CGCCGGCGGCCTATTTCCAGTCGCTGACTCCCAACGCCGCCGCCTGGACGCCGTCTGCTATCAGCCTGCCGGCGCAGCCT
GACTTTATCGTCGGCCCTGCGGGAACCCAGGGCGTAACCCATACCACCATTCAGGCGGCGGTGGATGCGGCAATTGCCCG
TCACTCTAACCGTCGTCTGTATATCGCGATTATGCCGGGCGAGTACCCGGGAACCGTCTACGTTCCGGCGGCGCCGGGCG
CCCTGACCCTGTATGGTACTGGCGATAAGCCAATCGACGTGAAAATCAGCGAAGCCATTGATTCCGAGATGGATCGCAAC
ACCTGGCGTCGTCTGGTCAATCCAGGCGGTAAATATATGCCGGGTAAACCGGCGTGGTATATGTTCGACAGTTGCCAAAG
CAAATCCGCGGCGACCGTCGGCGTAATGTGTTCCGCAGTCTTCTGGTCACAGAATAATGGTCTGCAGCTGCAGAACCTGA
CCATCGCCAACAACCTCGGCGACAGCGTTGACGCCGGTACCCACCAGGCGGTGGCATTGCGCAGCGATGGCGACCAGGTG
CAGATCAATAAGGTCAATATTCTTGGCCGTCAGAACACCTTCTTCGTGACCAACAGCGGCGTGCAAAACCGTCTGCAGGA
CAACCGTCAGACCCGCACCCTGGTGACCAACAGCTACATTGAAGGCGATGTGGATATCGTTTCCGGCCGCGGCGCGGTGG
TGTTTGATAACACCGATTTCCGCGTGGTGAACTCCCGTACCCAGAAAGAGGCCTACGTCTTCGCGCCGGCTACTCTGAAG
AGCGTGACCTACGGCTTCCTGGCGACCAACAGCCGCTTCACCGCCTCCGGGGATAACGTCGCGCAGCTCGGCCGCGCGCT
GGACGTCGATGGCAACAGCAACGGCCAGGTGGTGATCCGCGACAGCGCTATCAATGAAGGCTTTAATATTGCCCAGCCGT
GGGCGGCGGCGGTAGGCTCCGGCCGCCCGTTCAGCGGCAACACCGGCAGCGCCGATGACAAAGGCAATCTGCAGCGCAAC
CTCAACGACAACGGCTTCAACCGCATGTGGGAGTACAATAACCGCGGCGTGGGAAGCACCGTGGTCGCCGAGCCGAAACA
GTAA

Upstream 100 bases:

>100_bases
CGTTTCGTTCAAGTTAGTATAAAACAGCAGGTTTTAAAGGACTTATACCCTGGCGTCTCAGCCGGGGTATTTCACTACGC
TTAATTTTGCCCGGAGCAAC

Downstream 100 bases:

>100_bases
AGCGCAACAAGCGTGAACCATAATAAAAGAGAGGGCGATGCCCTCTCTCAAACTGCTGACAATGTGCAATCTTCAGGAAT
TGCCCGGCGGCGCTGCGCTT

Product: putative pectinesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLTPNAAAWTPSAISLPAQP
DFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRN
TWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQV
QINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLK
SVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRN
LNDNGFNRMWEYNNRGVGSTVVAEPKQ

Sequences:

>Translated_427_residues
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLTPNAAAWTPSAISLPAQP
DFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRN
TWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQV
QINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLK
SVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRN
LNDNGFNRMWEYNNRGVGSTVVAEPKQ
>Mature_427_residues
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLTPNAAAWTPSAISLPAQP
DFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRN
TWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQV
QINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLK
SVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRN
LNDNGFNRMWEYNNRGVGSTVVAEPKQ

Specific function: Putative thioesterase. Does not bind pectin, and has no pectinesterase activity [H]

COG id: COG4677

COG function: function code G; Pectin methylesterase

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pectinesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786989, Length=427, Percent_Identity=78.9227166276347, Blast_Score=698, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012334
- InterPro:   IPR011050
- InterPro:   IPR018040
- InterPro:   IPR000070 [H]

Pfam domain/function: PF01095 Pectinesterase [H]

EC number: NA

Molecular weight: Translated: 45573; Mature: 45573

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: PS00503 PECTINESTERASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQ
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH
SLTPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPG
HCCCCCCCCCCCCEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
EYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWY
CCCCEEEEECCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
MFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQV
EEECCCCCCCCCHHEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCEE
QINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDF
EEEEEEEEECCCEEEEECCCHHHHHHCCCCEEEEEEECEECCCEEEEECCCEEEECCCCE
RVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIR
EEECCCCCCCEEEECCHHHHHEEEEEEEECCEEEECCCCHHHHCCEEECCCCCCCEEEEE
DSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGST
ECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEECCCCCCCCE
VVAEPKQ
EEECCCC
>Mature Secondary Structure
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQ
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHH
SLTPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPG
HCCCCCCCCCCCCEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECC
EYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWY
CCCCEEEEECCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
MFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQV
EEECCCCCCCCCHHEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCEE
QINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDF
EEEEEEEEECCCEEEEECCCHHHHHHCCCCEEEEEEECEECCCEEEEECCCEEEECCCCE
RVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIR
EEECCCCCCCEEEECCHHHHHEEEEEEEECCEEEECCCCHHHHCCEEECCCCCCCEEEEE
DSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGST
ECCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEECCCCCCCCE
VVAEPKQ
EEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503; 8905232; 331474; 7567469; 10806384 [H]