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The map label for this gene is ybgH [H]

Identifier: 238893749

GI number: 238893749

Start: 1617046

End: 1618524

Strand: Reverse

Name: ybgH [H]

Synonym: KP1_1673

Alternate gene names: 238893749

Gene position: 1618524-1617046 (Counterclockwise)

Preceding gene: 238893758

Following gene: 238893746

Centisome position: 30.84

GC content: 60.92

Gene sequence:

>1479_bases
ATGCAGACAACATCATCGCAGCCGCGGGCGATCTACTACGTCGTGGCGCTGCAAATCTGGGAGTACTTTAGCTTTTACGG
CATGCGCGCCCTGCTGATCCTCTATCTCACCAATCAGCTCAAATATGACGATAACCATGCCTACGCCCTGTTCAGCGCCT
ACTGTTCGCTGGTCTATGTGACGCCGATCCTCGGCGGCTATCTGGCCGATAAGCTGTTAGGCAACCGGATGGCGGTCATG
CTCGGCGCGCTGCTGATGGCCATTGGCCATCTGGTGCTCGGGGCCAGCGAAACCGCTCCGGTTTTCCTGTACCTGTCGCT
GGCGATCATCGTCTGCGGCTACGGGTTGTTTAAATCCAACGTCAGCTGTCTGCTGGGCGAGCTGTACGAACCCGCCGATC
CGCGTCGCGATGGCGGCTTTTCGCTGATGTATGCCGCCGGCAATATCGGCTCGATTATCGCGCCGATCGCCTGCGGCTAC
GTACAGGAGGAGTATAGCTGGGCGATGGGCTTTGCCCTGGCGGCCATCGGCATGGTCGCGGGGCTGGTGATTTTCCTCTG
CGGCAACCGTCATTTCCAGCATACCGCCGGCGTCAACCGCCAGGCGCTGTGCGCGCGCCGCTTCCTGTTGCCGAACTGGG
GCTGGCTGCTGGTATTGCTGGTTACCGCCCCGCTGCTGATTGCGGTACTGTTCTGGCAGGAGTGGTCGGTGTATGCCCTG
ATCGTGGCTACGGCCATTGGCCTCGCGGTACTGGCGCGGATCTACCTGCGCGCCGAAACCGATAAACAGCGCAAGGATCT
GCGCCTGATCGTCGTCCTGACCGCCTTCAGCCTGCTGTTCTGGGCCTTCGCCCAGCAGGGCGGGAGCTCCATCAGCCTGT
ATATTGACCGCTTCGTTAACCGCCATATCATGAGCTACGAAGTCCCTACCGCTATGTTCCAGTCAATCAACGCCTTCGCG
GTGATGCTCTGCGGCATGGTGCTGGCGTGGCTGGTGAAAGAGAGCGTGAACGGCAATCGCACCGTGCGCATCTGGGGGAA
ATTTGCCCTCGGTCTGGGCCTGATGAGCGCCGGGTTCTGCATTTTGACCCTCAGCGCCCGCTGGTCGGCGGCCTATGGTC
AGTCGTCCATGCCGCTGATGGTGCTGGGTCTGGCGGTGATGGGCTTTGCCGAACTGTTTATCGACCCGGTCGCCATGTCG
CAGATCACCCGCATTGAGATCCCGGGTGTCACTGGGGTGCTGACCGGTATTTATATGCTGCTCTCAGGGGCCATCGCCAA
CTATCTGGCCGGCGTAATCGCCGACCAGACCTCGCAGGCGTCATTCGACGCCGCCGGAGCGGTGAACTACTCCATTGACG
CCTACATTACCGTCTTCAGCCAGATCACCTGGGGCGCGCTGGCCTGCGTCGGCGTGGTGCTGGTCATCTGGCTGTATCAT
TCGCTGAAAGTCAGGACCCGCCGTCTGGCGGTGGAGTAA

Upstream 100 bases:

>100_bases
TTAAATAATCAGAAAGCCCCTCAAGCCATGAATATGACTGATAAATCGCTATTCATGCAGAACGATCGACTTTCGCTTTA
CGCCAGGAAACACACTTCAT

Downstream 100 bases:

>100_bases
TTCCTTTTCTGGCGGCCTCCCAGGCCGCCAGCGTCTCCTGCCGCGCCTGCTTGTGATCAACTATCGGGCGCGAATAGTCC
AGCGTGATCCCTTGTTTATC

Product: PTR2-family transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MQTTSSQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYVTPILGGYLADKLLGNRMAVM
LGALLMAIGHLVLGASETAPVFLYLSLAIIVCGYGLFKSNVSCLLGELYEPADPRRDGGFSLMYAAGNIGSIIAPIACGY
VQEEYSWAMGFALAAIGMVAGLVIFLCGNRHFQHTAGVNRQALCARRFLLPNWGWLLVLLVTAPLLIAVLFWQEWSVYAL
IVATAIGLAVLARIYLRAETDKQRKDLRLIVVLTAFSLLFWAFAQQGGSSISLYIDRFVNRHIMSYEVPTAMFQSINAFA
VMLCGMVLAWLVKESVNGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAAYGQSSMPLMVLGLAVMGFAELFIDPVAMS
QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAAGAVNYSIDAYITVFSQITWGALACVGVVLVIWLYH
SLKVRTRRLAVE

Sequences:

>Translated_492_residues
MQTTSSQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYVTPILGGYLADKLLGNRMAVM
LGALLMAIGHLVLGASETAPVFLYLSLAIIVCGYGLFKSNVSCLLGELYEPADPRRDGGFSLMYAAGNIGSIIAPIACGY
VQEEYSWAMGFALAAIGMVAGLVIFLCGNRHFQHTAGVNRQALCARRFLLPNWGWLLVLLVTAPLLIAVLFWQEWSVYAL
IVATAIGLAVLARIYLRAETDKQRKDLRLIVVLTAFSLLFWAFAQQGGSSISLYIDRFVNRHIMSYEVPTAMFQSINAFA
VMLCGMVLAWLVKESVNGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAAYGQSSMPLMVLGLAVMGFAELFIDPVAMS
QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAAGAVNYSIDAYITVFSQITWGALACVGVVLVIWLYH
SLKVRTRRLAVE
>Mature_492_residues
MQTTSSQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYVTPILGGYLADKLLGNRMAVM
LGALLMAIGHLVLGASETAPVFLYLSLAIIVCGYGLFKSNVSCLLGELYEPADPRRDGGFSLMYAAGNIGSIIAPIACGY
VQEEYSWAMGFALAAIGMVAGLVIFLCGNRHFQHTAGVNRQALCARRFLLPNWGWLLVLLVTAPLLIAVLFWQEWSVYAL
IVATAIGLAVLARIYLRAETDKQRKDLRLIVVLTAFSLLFWAFAQQGGSSISLYIDRFVNRHIMSYEVPTAMFQSINAFA
VMLCGMVLAWLVKESVNGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAAYGQSSMPLMVLGLAVMGFAELFIDPVAMS
QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDAAGAVNYSIDAYITVFSQITWGALACVGVVLVIWLYH
SLKVRTRRLAVE

Specific function: Probable proton-dependent permease that transports dipeptides [H]

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family. DtpD subfamily [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=208, Percent_Identity=33.1730769230769, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI226371746, Length=201, Percent_Identity=31.8407960199005, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI226371748, Length=193, Percent_Identity=30.5699481865285, Blast_Score=78, Evalue=2e-14,
Organism=Escherichia coli, GI1786927, Length=492, Percent_Identity=85.7723577235772, Blast_Score=863, Evalue=0.0,
Organism=Escherichia coli, GI1790572, Length=473, Percent_Identity=59.1966173361522, Blast_Score=549, Evalue=1e-157,
Organism=Escherichia coli, GI1787922, Length=462, Percent_Identity=29.004329004329, Blast_Score=186, Evalue=3e-48,
Organism=Escherichia coli, GI1789911, Length=490, Percent_Identity=27.9591836734694, Blast_Score=178, Evalue=6e-46,
Organism=Caenorhabditis elegans, GI17569141, Length=311, Percent_Identity=27.0096463022508, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71987453, Length=174, Percent_Identity=29.8850574712644, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17541704, Length=197, Percent_Identity=29.9492385786802, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639585, Length=208, Percent_Identity=32.2115384615385, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24639583, Length=208, Percent_Identity=32.2115384615385, Blast_Score=94, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24639581, Length=208, Percent_Identity=32.2115384615385, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI28571098, Length=201, Percent_Identity=26.865671641791, Blast_Score=82, Evalue=8e-16,
Organism=Drosophila melanogaster, GI28571102, Length=201, Percent_Identity=26.865671641791, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28571100, Length=201, Percent_Identity=26.865671641791, Blast_Score=81, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 53871; Mature: 53871

Theoretical pI: Translated: 8.42; Mature: 8.42

Prosite motif: PS50850 MFS ; PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTTSSQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYV
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TPILGGYLADKLLGNRMAVMLGALLMAIGHLVLGASETAPVFLYLSLAIIVCGYGLFKSN
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
VSCLLGELYEPADPRRDGGFSLMYAAGNIGSIIAPIACGYVQEEYSWAMGFALAAIGMVA
HHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLVIFLCGNRHFQHTAGVNRQALCARRFLLPNWGWLLVLLVTAPLLIAVLFWQEWSVYAL
HHHHHHHCCCCCCHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IVATAIGLAVLARIYLRAETDKQRKDLRLIVVLTAFSLLFWAFAQQGGSSISLYIDRFVN
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHH
RHIMSYEVPTAMFQSINAFAVMLCGMVLAWLVKESVNGNRTVRIWGKFALGLGLMSAGFC
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCE
ILTLSARWSAAYGQSSMPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML
EEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHEEECCCHHHHHHHHHHH
LSGAIANYLAGVIADQTSQASFDAAGAVNYSIDAYITVFSQITWGALACVGVVLVIWLYH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLKVRTRRLAVE
HHHHHHHHHCCC
>Mature Secondary Structure
MQTTSSQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYALFSAYCSLVYV
CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
TPILGGYLADKLLGNRMAVMLGALLMAIGHLVLGASETAPVFLYLSLAIIVCGYGLFKSN
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHH
VSCLLGELYEPADPRRDGGFSLMYAAGNIGSIIAPIACGYVQEEYSWAMGFALAAIGMVA
HHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLVIFLCGNRHFQHTAGVNRQALCARRFLLPNWGWLLVLLVTAPLLIAVLFWQEWSVYAL
HHHHHHHCCCCCCHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IVATAIGLAVLARIYLRAETDKQRKDLRLIVVLTAFSLLFWAFAQQGGSSISLYIDRFVN
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHH
RHIMSYEVPTAMFQSINAFAVMLCGMVLAWLVKESVNGNRTVRIWGKFALGLGLMSAGFC
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCCCE
ILTLSARWSAAYGQSSMPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYML
EEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHEEECCCHHHHHHHHHHH
LSGAIANYLAGVIADQTSQASFDAAGAVNYSIDAYITVFSQITWGALACVGVVLVIWLYH
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLKVRTRRLAVE
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA