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The map label for this gene is ybeY [C]

Identifier: 238893719

GI number: 238893719

Start: 1583031

End: 1583504

Strand: Reverse

Name: ybeY [C]

Synonym: KP1_1641

Alternate gene names: 238893719

Gene position: 1583504-1583031 (Counterclockwise)

Preceding gene: 238893720

Following gene: 238893718

Centisome position: 30.17

GC content: 56.54

Gene sequence:

>474_bases
ATGAGTCAGGTGATCCTCGATTTACAGCTGGCCTGCGAAGAGACCAGCGGCCTGCCGGACGAAGCCCTTTTCCAACGCTG
GGTCGACGCCGTCATTCCGCCGTTTCAGGAAGAGTCAGAGTTAACGATTCGTCTGGTCGACGTTGCAGAAAGCCATGAGC
TGAACCTGACCTATCGCGGCAAGGATAAGCCGACCAACGTCCTCTCCTTCCCGTTTGAAGCGCCGCCGGGAATTGAAATG
CCGCTGCTCGGCGATCTGATCATCTGCCGTCAGGTGGTAGAGCAGGAAGCCAGCGAGCAAGGTAAGCCGCTGGAGGCGCA
CTGGGCGCATATGGTGGTGCACGGTAGCCTGCATCTGCTGGGCTACGATCATATCGAAGACGACGAAGCGGAAGAGATGG
AAGGCCTTGAAACAGAGATAATGCTTGCTCTGGGCTATGAGGACCCGTACATTTCCGAGAAGATTGCGGAATAG

Upstream 100 bases:

>100_bases
GCATCGTGAACGCCTATGAGGCATGGGAAGCCGCAGACCAGAAACGTAAAGCAGAGCTGGCCGCCGAGCGCAAACGCGAA
GCCCAGGAACAGGAGCAAAA

Downstream 100 bases:

>100_bases
CGCCCAGCCGGATGGCGGTGCTTGCGCCTCATCCGGCCGCTGTTTCTGCGTTTTACCTGCCAGAAAGTCAGGCAACCCAT
GCCGTCCGGCGCTGAGTTTA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSQVILDLQLACEETSGLPDEALFQRWVDAVIPPFQEESELTIRLVDVAESHELNLTYRGKDKPTNVLSFPFEAPPGIEM
PLLGDLIICRQVVEQEASEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEGLETEIMLALGYEDPYISEKIAE

Sequences:

>Translated_157_residues
MSQVILDLQLACEETSGLPDEALFQRWVDAVIPPFQEESELTIRLVDVAESHELNLTYRGKDKPTNVLSFPFEAPPGIEM
PLLGDLIICRQVVEQEASEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEGLETEIMLALGYEDPYISEKIAE
>Mature_156_residues
SQVILDLQLACEETSGLPDEALFQRWVDAVIPPFQEESELTIRLVDVAESHELNLTYRGKDKPTNVLSFPFEAPPGIEMP
LLGDLIICRQVVEQEASEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEGLETEIMLALGYEDPYISEKIAE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=154, Percent_Identity=86.3636363636364, Blast_Score=259, Evalue=5e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_KLEP3 (B5XZQ2)

Other databases:

- EMBL:   CP000964
- RefSeq:   YP_002239693.1
- ProteinModelPortal:   B5XZQ2
- SMR:   B5XZQ2
- GeneID:   6939633
- GenomeReviews:   CP000964_GR
- KEGG:   kpe:KPK_3889
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17684; Mature: 17553

Theoretical pI: Translated: 3.90; Mature: 3.90

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVILDLQLACEETSGLPDEALFQRWVDAVIPPFQEESELTIRLVDVAESHELNLTYRG
CCCEEEEHEEHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECC
KDKPTNVLSFPFEAPPGIEMPLLGDLIICRQVVEQEASEQGKPLEAHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECCEEEE
GYDHIEDDEAEEMEGLETEIMLALGYEDPYISEKIAE
ECCCCCCCCHHHHCCCCEEEEEEECCCCCCCHHHHCC
>Mature Secondary Structure 
SQVILDLQLACEETSGLPDEALFQRWVDAVIPPFQEESELTIRLVDVAESHELNLTYRG
CCEEEEHEEHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECC
KDKPTNVLSFPFEAPPGIEMPLLGDLIICRQVVEQEASEQGKPLEAHWAHMVVHGSLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECCEEEE
GYDHIEDDEAEEMEGLETEIMLALGYEDPYISEKIAE
ECCCCCCCCHHHHCCCCEEEEEEECCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA