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The map label for this gene is ybeF [H]

Identifier: 238893696

GI number: 238893696

Start: 1557785

End: 1558819

Strand: Reverse

Name: ybeF [H]

Synonym: KP1_1616

Alternate gene names: 238893696

Gene position: 1558819-1557785 (Counterclockwise)

Preceding gene: 238893697

Following gene: 238893695

Centisome position: 29.7

GC content: 57.68

Gene sequence:

>1035_bases
TTGCAATCAATTGTCACGCACGGCAACGCGGTGGGCCGCTATACTTGGCCTATCATTCCCAACCGGACTCATCGCGTGCC
AGAGAATACGCCTCCGTCAGAATCTCCTGACAGACAGGATGAACGTTACGATCGTCAAATGTTTCGCATCCTGCGTAATA
TTGACCTCAATCTGTTGACGATCTTTGAAGCGGTATACGTGCATAAAGGTATCGTCAACGCCGCGAAGATACTCAATATC
ACACCGTCGGCGATTAGCCAGTCAATTAACAAACTGCGGGCGCTGTTCCCCGATCCGCTATTTATCCGCAAAGGACAGGG
CGTTACCCCCACCGCCTATGCCACCCATCTTCATCAATACATCAGCCGCGGCATGGAAGCTTTCCTCAGCGCGCTGGATA
TCACCGGTAGCCCGCACCAGCAGCGGGTGATCACTATCGCCACTACGCCAGCGATGGGAGCGCTGCTGATGCCTGGCCTG
GCCAGCGCGCTGAAGCCGACCTTTCCGCAGATCTTGTTGCACAATATCGCCATCGTCGACGCCGCGCGGCAGCTTGACCA
GCGCCAGGTGGATCTGCTCATTGATACCCACCTGCACAGCGGCCAGGCGATAAGCCATCATGTGCTGTATCAGGATCGGG
TACAGATGTACTGCCGCGCAGGGCATCCCGCGCTGGACGGTCCGCAGGATGAAACGACCCTCGCGGAGTACGAATTTGCG
CTGCTGCTGCCGGAAGGCCAGCGCTACCCCACCCTCCATCGCCGACTACAGGAAGAGATGGGCGAGCGCCGCTGCGGCTT
TAGCACCTTTAACCTGATGACCCAGGCGGCGATGATCGCCGGGAGCGATATGCTGGGTCTGACCACCGAACGCCTGTTCG
CCATGGTGTCCCGTCTCTGGCCGCTGCAGACCCTGGATTTCCCTTCCCTGGGTGGAGAGCAGATTGACGTTGCGCTGCAC
TTTAATAAGCTGAGCGGGAAAGAGCCATTGCTGAAAGAGATCATCGAGACGGTGATCCGCTCGTTTAAGGCGTAG

Upstream 100 bases:

>100_bases
GCGCTGCTAAATCATCCACCGCACGAATATCTTCCCCGGGATTAAGCGGCAGGCCAACGTCCCGCTGTCAGCGGGGCGCT
AAACGAGTAACACGTTATTT

Downstream 100 bases:

>100_bases
CGCACGGAAGGGAAAAGGATAAAACAACAACTATTTTACAATTTGCCGGGCAGGCAGGCTGCTTTCTGCCCCTTTTCAAT
GGTATACTGCCTGCTCTTGA

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MQSIVTHGNAVGRYTWPIIPNRTHRVPENTPPSESPDRQDERYDRQMFRILRNIDLNLLTIFEAVYVHKGIVNAAKILNI
TPSAISQSINKLRALFPDPLFIRKGQGVTPTAYATHLHQYISRGMEAFLSALDITGSPHQQRVITIATTPAMGALLMPGL
ASALKPTFPQILLHNIAIVDAARQLDQRQVDLLIDTHLHSGQAISHHVLYQDRVQMYCRAGHPALDGPQDETTLAEYEFA
LLLPEGQRYPTLHRRLQEEMGERRCGFSTFNLMTQAAMIAGSDMLGLTTERLFAMVSRLWPLQTLDFPSLGGEQIDVALH
FNKLSGKEPLLKEIIETVIRSFKA

Sequences:

>Translated_344_residues
MQSIVTHGNAVGRYTWPIIPNRTHRVPENTPPSESPDRQDERYDRQMFRILRNIDLNLLTIFEAVYVHKGIVNAAKILNI
TPSAISQSINKLRALFPDPLFIRKGQGVTPTAYATHLHQYISRGMEAFLSALDITGSPHQQRVITIATTPAMGALLMPGL
ASALKPTFPQILLHNIAIVDAARQLDQRQVDLLIDTHLHSGQAISHHVLYQDRVQMYCRAGHPALDGPQDETTLAEYEFA
LLLPEGQRYPTLHRRLQEEMGERRCGFSTFNLMTQAAMIAGSDMLGLTTERLFAMVSRLWPLQTLDFPSLGGEQIDVALH
FNKLSGKEPLLKEIIETVIRSFKA
>Mature_344_residues
MQSIVTHGNAVGRYTWPIIPNRTHRVPENTPPSESPDRQDERYDRQMFRILRNIDLNLLTIFEAVYVHKGIVNAAKILNI
TPSAISQSINKLRALFPDPLFIRKGQGVTPTAYATHLHQYISRGMEAFLSALDITGSPHQQRVITIATTPAMGALLMPGL
ASALKPTFPQILLHNIAIVDAARQLDQRQVDLLIDTHLHSGQAISHHVLYQDRVQMYCRAGHPALDGPQDETTLAEYEFA
LLLPEGQRYPTLHRRLQEEMGERRCGFSTFNLMTQAAMIAGSDMLGLTTERLFAMVSRLWPLQTLDFPSLGGEQIDVALH
FNKLSGKEPLLKEIIETVIRSFKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081766, Length=297, Percent_Identity=54.5454545454545, Blast_Score=341, Evalue=3e-95,
Organism=Escherichia coli, GI1786820, Length=300, Percent_Identity=28.3333333333333, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081684, Length=182, Percent_Identity=25.2747252747253, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790147, Length=238, Percent_Identity=28.9915966386555, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787601, Length=246, Percent_Identity=23.5772357723577, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38628; Mature: 38628

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSIVTHGNAVGRYTWPIIPNRTHRVPENTPPSESPDRQDERYDRQMFRILRNIDLNLLT
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
IFEAVYVHKGIVNAAKILNITPSAISQSINKLRALFPDPLFIRKGQGVTPTAYATHLHQY
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
ISRGMEAFLSALDITGSPHQQRVITIATTPAMGALLMPGLASALKPTFPQILLHNIAIVD
HHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AARQLDQRQVDLLIDTHLHSGQAISHHVLYQDRVQMYCRAGHPALDGPQDETTLAEYEFA
HHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEEEE
LLLPEGQRYPTLHRRLQEEMGERRCGFSTFNLMTQAAMIAGSDMLGLTTERLFAMVSRLW
EEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
PLQTLDFPSLGGEQIDVALHFNKLSGKEPLLKEIIETVIRSFKA
CCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQSIVTHGNAVGRYTWPIIPNRTHRVPENTPPSESPDRQDERYDRQMFRILRNIDLNLLT
CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHH
IFEAVYVHKGIVNAAKILNITPSAISQSINKLRALFPDPLFIRKGQGVTPTAYATHLHQY
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH
ISRGMEAFLSALDITGSPHQQRVITIATTPAMGALLMPGLASALKPTFPQILLHNIAIVD
HHHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
AARQLDQRQVDLLIDTHLHSGQAISHHVLYQDRVQMYCRAGHPALDGPQDETTLAEYEFA
HHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEEEE
LLLPEGQRYPTLHRRLQEEMGERRCGFSTFNLMTQAAMIAGSDMLGLTTERLFAMVSRLW
EEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
PLQTLDFPSLGGEQIDVALHFNKLSGKEPLLKEIIETVIRSFKA
CCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8444795; 8905232; 9278503 [H]