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The map label for this gene is ybdH [H]

Identifier: 238893653

GI number: 238893653

Start: 1511587

End: 1512675

Strand: Reverse

Name: ybdH [H]

Synonym: KP1_1568

Alternate gene names: 238893653

Gene position: 1512675-1511587 (Counterclockwise)

Preceding gene: 238893658

Following gene: 238893652

Centisome position: 28.82

GC content: 64.65

Gene sequence:

>1089_bases
ATGAGCAACAGCGATATCCGCGTCGTGCCCGGCCCGGCCAACTATTTCTCCCATCCTGGCAGCCTTGAGCGGCTGAGCGA
TTTTTTTAACGCCGACCAGCTCTCGCGAGCGGTGTGGGTCTATGGCGAGCGCGCTCTGGCCGGCGCCGAACCTTTTCTGC
CGGCGGCCTTCCACCTGCCGGAGGCGAAAAAGATCCGCTTTACCGGCCACTGCAGCGAACGCGACGTGGCGGGGCTGGTG
CAGGCCTCCGGTGACGATCGGGCGGTAGTGATTGGCGTCGGCGGCGGCGCGCTGCTCGACAGCGCGAAAGTGCTGGCCCG
CCGCCTGGGGGTACCGCTGGTGGCCATCCCGACTATCGCCGCCACCTGCGCGGCGTGGACGCCGCTGTCGGTGTGGTATA
GCGACGCCGGACAGGCCCTGAATTTTGAGATCTTCGATGACGCCAACTTCCTGGTGCTGGTCGAACCGCGCATCATTCTC
AACGCCCCGGCGGAGTACCTGCTGGCGGGCATTGGCGACACCTTAGCCAAATGGTATGAGGCCGTGGTGCTGGCGCCGCA
GCCGAAGGCGCTGCCGCTCACCGTACGGCTGGGGATTAACGGCGCGCTGGCGATCCGCGACGTGCTGCTGGCCAGCAGCG
AAACGGCGCTGGCGGACCAGCGCCGCGGCGATCTGACCCAGGCGTTTCGCGATGTGGTGGAGGCGATTATCGCCGGTGGC
GGGATGGTTGGCGGGCTGGGGGAACGTTACACCCGGGTCGCCGCCGCCCATGCGGTGCACAACGGACTGACGGTGCTGCC
GCAGACGGATAAATTTCTTCACGGTACCAAAGTGGCCTACGGCATTCTGGTACAGAGCGCCCTGCTTGGTCAGGACGATG
TGCTGGCGCAGTTAGTGCAGGCGTATCAGCGCTTTAACCTGCCGACCACCCTGGCGGCGCTGGAAGTCGATATCAATAAC
CGCGCAGAGCTGGACCGGGTCATTGCCCATACCCTGCGCCCGGGCGAGTCGATTCACTATTTACCGGTGACGTTAACCCC
TGAGGTTCTGCGCGCGGCGTTTGAGAAGGTGGAATACTTCAGCCGTTAA

Upstream 100 bases:

>100_bases
ACAACTGCGTAAAAAGCATAAGATACAACGAAATAATATTAGCCATCTGGATGTCCAGACATAACATCAGGTTAGCCCAA
CACCCATAAGGACAGCTTCC

Downstream 100 bases:

>100_bases
TCACCCCGACCGTCTATACCTAATGATGATGCTCACCACTCTCGCAACGAGGTCATCATGCAGATCGATTTAACAGGTAA
GAAGGCGCTGGTTACCGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MSNSDIRVVPGPANYFSHPGSLERLSDFFNADQLSRAVWVYGERALAGAEPFLPAAFHLPEAKKIRFTGHCSERDVAGLV
QASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIAATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIIL
NAPAEYLLAGIGDTLAKWYEAVVLAPQPKALPLTVRLGINGALAIRDVLLASSETALADQRRGDLTQAFRDVVEAIIAGG
GMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLGQDDVLAQLVQAYQRFNLPTTLAALEVDINN
RAELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYFSR

Sequences:

>Translated_362_residues
MSNSDIRVVPGPANYFSHPGSLERLSDFFNADQLSRAVWVYGERALAGAEPFLPAAFHLPEAKKIRFTGHCSERDVAGLV
QASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIAATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIIL
NAPAEYLLAGIGDTLAKWYEAVVLAPQPKALPLTVRLGINGALAIRDVLLASSETALADQRRGDLTQAFRDVVEAIIAGG
GMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLGQDDVLAQLVQAYQRFNLPTTLAALEVDINN
RAELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYFSR
>Mature_361_residues
SNSDIRVVPGPANYFSHPGSLERLSDFFNADQLSRAVWVYGERALAGAEPFLPAAFHLPEAKKIRFTGHCSERDVAGLVQ
ASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIAATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIILN
APAEYLLAGIGDTLAKWYEAVVLAPQPKALPLTVRLGINGALAIRDVLLASSETALADQRRGDLTQAFRDVVEAIIAGGG
MVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLGQDDVLAQLVQAYQRFNLPTTLAALEVDINNR
AELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYFSR

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=361, Percent_Identity=79.5013850415512, Blast_Score=561, Evalue=1e-161,
Organism=Escherichia coli, GI87082352, Length=360, Percent_Identity=31.9444444444444, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 38865; Mature: 38734

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS00913 ADH_IRON_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSDIRVVPGPANYFSHPGSLERLSDFFNADQLSRAVWVYGERALAGAEPFLPAAFHLP
CCCCCEEEECCCHHHCCCCCCHHHHHHHHCHHHHCCEEEEECCHHHCCCCCCCCHHCCCC
EAKKIRFTGHCSERDVAGLVQASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIA
CCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIILNAPAEYLLAGIGDTLAKWYE
HHHHCCCCHHEEECCCCCEEEEEEECCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHH
AVVLAPQPKALPLTVRLGINGALAIRDVLLASSETALADQRRGDLTQAFRDVVEAIIAGG
EEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCC
GMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLGQDDVLAQLVQ
CCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYQRFNLPTTLAALEVDINNRAELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYF
HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHH
SR
CC
>Mature Secondary Structure 
SNSDIRVVPGPANYFSHPGSLERLSDFFNADQLSRAVWVYGERALAGAEPFLPAAFHLP
CCCCEEEECCCHHHCCCCCCHHHHHHHHCHHHHCCEEEEECCHHHCCCCCCCCHHCCCC
EAKKIRFTGHCSERDVAGLVQASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIA
CCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEHHHHH
ATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIILNAPAEYLLAGIGDTLAKWYE
HHHHCCCCHHEEECCCCCEEEEEEECCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHH
AVVLAPQPKALPLTVRLGINGALAIRDVLLASSETALADQRRGDLTQAFRDVVEAIIAGG
EEEECCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHCC
GMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLGQDDVLAQLVQ
CCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
AYQRFNLPTTLAALEVDINNRAELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYF
HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHH
SR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]