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The map label for this gene is rcnA [H]

Identifier: 238893410

GI number: 238893410

Start: 1249823

End: 1250650

Strand: Reverse

Name: rcnA [H]

Synonym: KP1_1296

Alternate gene names: 238893410

Gene position: 1250650-1249823 (Counterclockwise)

Preceding gene: 238893412

Following gene: 238893408

Centisome position: 23.83

GC content: 60.75

Gene sequence:

>828_bases
ATGAACGATTACACTTCCCTTCTGCAGCAGGGCAATGCCTGGCTGTTTATACCCAGCGCAATACTGCTCGGCGCGCTGCA
CGGTCTCGAACCCGGGCACTCAAAAACAATGATGGCCGCCTTTATCGTGGCGGTGCGAGGAACCTTAAAACAGGCGGTAC
TGCTGGGGCTGGCGGCCACGGTTTCGCATACGGCGGTGGTCTGGCTGATCGCCATGGCCGGCCTGTGGTTTGGCCGCGGC
TGGAACGCCCAAACCTCTGAACCCTGGTTTCAGCTGGTCTCAGGGATTGTCATTGTGCTGATTGCCTGCTGGATACTCTG
GCGCATCTGGCGCGAATCGCAGCCTCACACGCACCATGAGCACCACCATGAACATGATCACCACCATGACCATGATCACC
GCCATGACCATCACCATGCGTCCTCATCCGCCGCGCCGCTGGTGGCGGAGGAGTGGCAGGACGCGCATCAGCGGGCTCAT
GCTCAGGAGATCAACCGGCGCTTTGATGGCCGCCAGGTGACGACCGGGCAGATCGTGCTGTTTGGCCTGACCGGCGGGCT
GATCCCCTGCCCGGCGTCCATTACCGTGCTGCTTATCTGTTTACAGCTGAAGAAATTCTCGCTGGGCGCCACGCTGGTAC
TGGGCTTTAGCGTTGGTCTGGCGCTGACGCTGGTGGCTTCCGGGGCCATCGCCGCCCTGAGCCTTAAACATGCCACCCGC
CGCTGGCCGTGGCTTAACGACCTCTCGCGCAAGGCGCCCTGGTTCTCAGGCTTACTGATTATTGTGGTGGGGATCTACAT
GATGCTTCATGGCCTGAGCGGCCTGTAA

Upstream 100 bases:

>100_bases
CATACCATGATCCTTTTTATTAGCCGCTTTATCTACTGGGGGGTAGTATTTTACTACTGGGGGGGAGTAGGATAATCGCA
CTTTTGGCAAGGATCCCGAT

Downstream 100 bases:

>100_bases
GCGATGAAAGGCCCTCTCCATGATGAAGAGGGCGATGGGTTAATTCAGGAGACTATTTCCCGGGGAGGGCTGACCGCGTT
GCGGCTGACGGGCTGGCTGA

Product: nickel/cobalt efflux protein RcnA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MNDYTSLLQQGNAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTLKQAVLLGLAATVSHTAVVWLIAMAGLWFGRG
WNAQTSEPWFQLVSGIVIVLIACWILWRIWRESQPHTHHEHHHEHDHHHDHDHRHDHHHASSSAAPLVAEEWQDAHQRAH
AQEINRRFDGRQVTTGQIVLFGLTGGLIPCPASITVLLICLQLKKFSLGATLVLGFSVGLALTLVASGAIAALSLKHATR
RWPWLNDLSRKAPWFSGLLIIVVGIYMMLHGLSGL

Sequences:

>Translated_275_residues
MNDYTSLLQQGNAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTLKQAVLLGLAATVSHTAVVWLIAMAGLWFGRG
WNAQTSEPWFQLVSGIVIVLIACWILWRIWRESQPHTHHEHHHEHDHHHDHDHRHDHHHASSSAAPLVAEEWQDAHQRAH
AQEINRRFDGRQVTTGQIVLFGLTGGLIPCPASITVLLICLQLKKFSLGATLVLGFSVGLALTLVASGAIAALSLKHATR
RWPWLNDLSRKAPWFSGLLIIVVGIYMMLHGLSGL
>Mature_275_residues
MNDYTSLLQQGNAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTLKQAVLLGLAATVSHTAVVWLIAMAGLWFGRG
WNAQTSEPWFQLVSGIVIVLIACWILWRIWRESQPHTHHEHHHEHDHHHDHDHRHDHHHASSSAAPLVAEEWQDAHQRAH
AQEINRRFDGRQVTTGQIVLFGLTGGLIPCPASITVLLICLQLKKFSLGATLVLGFSVGLALTLVASGAIAALSLKHATR
RWPWLNDLSRKAPWFSGLLIIVVGIYMMLHGLSGL

Specific function: Efflux system for nickel and cobalt [H]

COG id: COG2215

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NiCoT transporter (TC 2.A.52) family. RcnA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788423, Length=275, Percent_Identity=58.9090909090909, Blast_Score=313, Evalue=8e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011541 [H]

Pfam domain/function: PF03824 NicO [H]

EC number: NA

Molecular weight: Translated: 30396; Mature: 30396

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDYTSLLQQGNAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTLKQAVLLGLAAT
CCHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSHTAVVWLIAMAGLWFGRGWNAQTSEPWFQLVSGIVIVLIACWILWRIWRESQPHTHHE
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
HHHEHDHHHDHDHRHDHHHASSSAAPLVAEEWQDAHQRAHAQEINRRFDGRQVTTGQIVL
HCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEE
FGLTGGLIPCPASITVLLICLQLKKFSLGATLVLGFSVGLALTLVASGAIAALSLKHATR
EECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWPWLNDLSRKAPWFSGLLIIVVGIYMMLHGLSGL
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNDYTSLLQQGNAWLFIPSAILLGALHGLEPGHSKTMMAAFIVAVRGTLKQAVLLGLAAT
CCHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSHTAVVWLIAMAGLWFGRGWNAQTSEPWFQLVSGIVIVLIACWILWRIWRESQPHTHHE
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
HHHEHDHHHDHDHRHDHHHASSSAAPLVAEEWQDAHQRAHAQEINRRFDGRQVTTGQIVL
HCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEE
FGLTGGLIPCPASITVLLICLQLKKFSLGATLVLGFSVGLALTLVASGAIAALSLKHATR
EECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RWPWLNDLSRKAPWFSGLLIIVVGIYMMLHGLSGL
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA