Click here to switch to the map view.

The map label for this gene is yisV [H]

Identifier: 238893408

GI number: 238893408

Start: 1247648

End: 1249093

Strand: Reverse

Name: yisV [H]

Synonym: KP1_1294

Alternate gene names: 238893408

Gene position: 1249093-1247648 (Counterclockwise)

Preceding gene: 238893410

Following gene: 238893405

Centisome position: 23.8

GC content: 64.18

Gene sequence:

>1446_bases
TTGGAAAAGTGGATCGCTATGTCAGCCCGACGCTTTGGAACCCAATCGCTGGTACGCCTGCTCGGCAACTGGCAGGAGAC
CAGCTCACGCACGCCGCTATGGCGCCAGCTGGCGGAAGCGCTCCGCCTGCTGATCCTTGATGGTCGCCTGACGCTGCAAA
CGCGCCTGCCCGGCGAGCGCGAGCTGGCGGCGGCCCTGAACGTCAGCCGGACCACCATCGCCAGCGCCCTCGGCCAGTTG
CGGGAGGAGGGCTTTCTCTACAGCCGCCAGGGGAGCGGGTCACGCATTGTTTTGCCGGAACGCCCCGCCGATCTTCCTCT
GCCTGCCGGCATCTCATCTACGCTTAATCTATCTACCGCCGCCCTCAGCGCCGGGCCGGAGGTCCATCAGGCCTTCCAGC
ACGCTATGACCCTGCTGCCGCCCTATCTCGCACAGACTGGCTATGACCAGCAGGGGCTGCCGGTGCTGCGGGAGGCGATT
GCCCGGCGCTACAGCGAACGCGGTCTGCCGACGCGGCCCGATGAGGTGATGGTGGTCAACGGCGCGCTCAGCGCCTTCGC
GCTGATCCTGCGCCTGTTCACCGGGCCGGGCGATCGGGTGGTTATTGACGCTCCAACCTATCCGATGGCCATCAGCGCCA
TTCAGGGCGCCTCCTGCCGCCCCGTCGGGGTTGCGCTTCCGCAGCAGGGATGGGACTGCGATGGACTGGCGGCGACTATT
GCGCAGACTGCGCCGCGGCTGGCGTGGCTGATGCCGGATTTTCACAACCCCACCGGACGCTGTATGGATGCCCCCACCCG
CCAGCGGGTTGCGGACATCGCCGCCAGGACGCGAACAACGCTGGTAATCGACGAGACCATGGCCGACCTTTGGTATAACG
CGCCGCCGCCCCCACCGCTGGCCAGCTTCAATCCCGATGCCGCGGTGCTCACCATTGGTTCGGCCGGGAAAAGCTTCTGG
GGGGGACTACGTATCGGCTGGATCCGCGCCAGCGCACGGACCATCGCCTCGCTTATTCAGGCCCGCGATTCGCTGGATTT
GGGTACGCCGCTGCTGGAGCAACTGGCTTGCTGCTGGCTACTGGAAAATGCCGCCACACTGCTGCCGCCGCGGCGGGATA
TGCTCAAGGCGCGCCGGGACATGTGCGAAACGCTGATGGCGGAATATTTTCCCCGCTGGCGGTTTTCGCCACCGGAAGGT
GGGCTCTCTTTTTGGGTGGAACTTCCTGACATGCTGGCCACCCTGTTCTCTGCGCGTGCGGAAAGCCAGGGGATCCATAT
CGGCACCGGTACGCGGTTTGGGCTGGAAGGGGCGTTCGATCGCTATTTACGTCTGCCGTTTACGCTGCCGGATGAAGCAT
TGCGCCGGGCCTTCTCCACGCTACAACCGCTGTGGCAAAGCCTTGCTGAACAGAAGGAAAATACACGTTTGCGAAAAATA
ATATAA

Upstream 100 bases:

>100_bases
AATATATAACTGCAGCAGGCGACGAAGCATATTTTTTCCTCAACATCATTGCGAATGCCCTCATCATCAGCAAAAATGGA
CTGATAATTAATGGCCAGTT

Downstream 100 bases:

>100_bases
GAAAATAGCGACGGGCTGACTTCAGCCCGTCAAATGACCTTCATCCATGAGGTATATGAGATGTTTTTATAAAATTGCCT
GGCTATCCTGCCCTCTGGTT

Product: putative GntR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 481

Protein sequence:

>481_residues
MEKWIAMSARRFGTQSLVRLLGNWQETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQL
REEGFLYSRQGSGSRIVLPERPADLPLPAGISSTLNLSTAALSAGPEVHQAFQHAMTLLPPYLAQTGYDQQGLPVLREAI
ARRYSERGLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQGWDCDGLAATI
AQTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDAAVLTIGSAGKSFW
GGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACCWLLENAATLLPPRRDMLKARRDMCETLMAEYFPRWRFSPPEG
GLSFWVELPDMLATLFSARAESQGIHIGTGTRFGLEGAFDRYLRLPFTLPDEALRRAFSTLQPLWQSLAEQKENTRLRKI
I

Sequences:

>Translated_481_residues
MEKWIAMSARRFGTQSLVRLLGNWQETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQL
REEGFLYSRQGSGSRIVLPERPADLPLPAGISSTLNLSTAALSAGPEVHQAFQHAMTLLPPYLAQTGYDQQGLPVLREAI
ARRYSERGLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQGWDCDGLAATI
AQTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDAAVLTIGSAGKSFW
GGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACCWLLENAATLLPPRRDMLKARRDMCETLMAEYFPRWRFSPPEG
GLSFWVELPDMLATLFSARAESQGIHIGTGTRFGLEGAFDRYLRLPFTLPDEALRRAFSTLQPLWQSLAEQKENTRLRKI
I
>Mature_481_residues
MEKWIAMSARRFGTQSLVRLLGNWQETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGERELAAALNVSRTTIASALGQL
REEGFLYSRQGSGSRIVLPERPADLPLPAGISSTLNLSTAALSAGPEVHQAFQHAMTLLPPYLAQTGYDQQGLPVLREAI
ARRYSERGLPTRPDEVMVVNGALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQGWDCDGLAATI
AQTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPLASFNPDAAVLTIGSAGKSFW
GGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACCWLLENAATLLPPRRDMLKARRDMCETLMAEYFPRWRFSPPEG
GLSFWVELPDMLATLFSARAESQGIHIGTGTRFGLEGAFDRYLRLPFTLPDEALRRAFSTLQPLWQSLAEQKENTRLRKI
I

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=322, Percent_Identity=20.8074534161491, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI33469970, Length=322, Percent_Identity=20.8074534161491, Blast_Score=74, Evalue=3e-13,
Organism=Escherichia coli, GI1787710, Length=447, Percent_Identity=27.2930648769575, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1790797, Length=322, Percent_Identity=26.7080745341615, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788722, Length=335, Percent_Identity=24.1791044776119, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788627, Length=190, Percent_Identity=24.2105263157895, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53017; Mature: 53017

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKWIAMSARRFGTQSLVRLLGNWQETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGER
CCCHHHHHHHHCCHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
ELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVLPERPADLPLPAGISSTLNLSTA
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHH
ALSAGPEVHQAFQHAMTLLPPYLAQTGYDQQGLPVLREAIARRYSERGLPTRPDEVMVVN
HHHCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
GALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQGWDCDGLAATI
CHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHH
AQTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPL
HHHCCHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEHHHHHHHCCCCCCCCCC
ASFNPDAAVLTIGSAGKSFWGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACCWL
CCCCCCCEEEEECCCCCHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LENAATLLPPRRDMLKARRDMCETLMAEYFPRWRFSPPEGGLSFWVELPDMLATLFSARA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
ESQGIHIGTGTRFGLEGAFDRYLRLPFTLPDEALRRAFSTLQPLWQSLAEQKENTRLRKI
CCCCEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
I
C
>Mature Secondary Structure
MEKWIAMSARRFGTQSLVRLLGNWQETSSRTPLWRQLAEALRLLILDGRLTLQTRLPGER
CCCHHHHHHHHCCHHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHH
ELAAALNVSRTTIASALGQLREEGFLYSRQGSGSRIVLPERPADLPLPAGISSTLNLSTA
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHH
ALSAGPEVHQAFQHAMTLLPPYLAQTGYDQQGLPVLREAIARRYSERGLPTRPDEVMVVN
HHHCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
GALSAFALILRLFTGPGDRVVIDAPTYPMAISAIQGASCRPVGVALPQQGWDCDGLAATI
CHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHH
AQTAPRLAWLMPDFHNPTGRCMDAPTRQRVADIAARTRTTLVIDETMADLWYNAPPPPPL
HHHCCHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEEHHHHHHHCCCCCCCCCC
ASFNPDAAVLTIGSAGKSFWGGLRIGWIRASARTIASLIQARDSLDLGTPLLEQLACCWL
CCCCCCCEEEEECCCCCHHHCCCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LENAATLLPPRRDMLKARRDMCETLMAEYFPRWRFSPPEGGLSFWVELPDMLATLFSARA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH
ESQGIHIGTGTRFGLEGAFDRYLRLPFTLPDEALRRAFSTLQPLWQSLAEQKENTRLRKI
CCCCEEECCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]