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The map label for this gene is yagA [C]

Identifier: 238893252

GI number: 238893252

Start: 1096872

End: 1097576

Strand: Reverse

Name: yagA [C]

Synonym: KP1_1124

Alternate gene names: 238893252

Gene position: 1097576-1096872 (Counterclockwise)

Preceding gene: 238893253

Following gene: 238893251

Centisome position: 20.91

GC content: 53.62

Gene sequence:

>705_bases
ATGGCGCTGACCGTGGCGGCTGAACGCTATCCGCGATACGGATTTAAAAAGCTTTTTCAGGTCCTTCGCAGGCAGGGCAA
CGCCTGGAACCATAAGCGCGTTCACCGGATTTACTACCTGCTGAAACTGAATTTTCGCCGTAAGGGAAAACAGCGCCTGC
CGGTGCGCAATCCGGCTCCGCTGGCAACACCAGAGGCGATGAACCAGAGCTGGTCCATCGATTTTATGCACGATGCGCTG
GTGTGTGGCAGACGTTTCAGGACCTTCAACGTGGTGGATGATTATAACCGGGAAGCGCTGGCGATCGAAATTGACCTGAA
TATCCCGGCGCAGCGGGTTGTCAGAGTGCTGGGCAGGATCGTGGCAAACCGCGGATATCCGCTGAAGATGCGGATGGATA
ACGGTCCGGAGCTGGTCTCGCTGACGCTGGCACAATGGTCAGAAGAGCATGGTGTGATGCTGGAATTTATCAGGCCCGGC
AAGCAAACACAGAATGCCTTTATCGAACGATTCAACCGGACGTACCGGACAGAAATACTGGATTTTTATCTGTTCAGAAC
ACTGAACGAAGCACGTGAAATTACAGAGCGCTGGCTGGCTGAATATAACAGCGAGCGCGCCCATGAATCCCTGAATAACC
TGACGCCGGAAGAATACCGGCTGATGGCTGAGACCCCGGAAATCTCAAAAAGTGCGTGGAACTAA

Upstream 100 bases:

>100_bases
ACAGTTTGCCATGAGCTTACGTCAGGCATGCAGGACATTGTCGCTGAGCAGGACGGTATTTCGTTATCAGCCGGATACGC
GACGGGATGAGTCGGTAATT

Downstream 100 bases:

>100_bases
AACGGGTGCGCTTACACAATCTCGCCCTCAGGGAGGAAAGCAATGCCGACTGGCTGCCGAAGTGCGACGACCCCACCGCA
ACATAACCTACCCGGACCGG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MALTVAAERYPRYGFKKLFQVLRRQGNAWNHKRVHRIYYLLKLNFRRKGKQRLPVRNPAPLATPEAMNQSWSIDFMHDAL
VCGRRFRTFNVVDDYNREALAIEIDLNIPAQRVVRVLGRIVANRGYPLKMRMDNGPELVSLTLAQWSEEHGVMLEFIRPG
KQTQNAFIERFNRTYRTEILDFYLFRTLNEAREITERWLAEYNSERAHESLNNLTPEEYRLMAETPEISKSAWN

Sequences:

>Translated_234_residues
MALTVAAERYPRYGFKKLFQVLRRQGNAWNHKRVHRIYYLLKLNFRRKGKQRLPVRNPAPLATPEAMNQSWSIDFMHDAL
VCGRRFRTFNVVDDYNREALAIEIDLNIPAQRVVRVLGRIVANRGYPLKMRMDNGPELVSLTLAQWSEEHGVMLEFIRPG
KQTQNAFIERFNRTYRTEILDFYLFRTLNEAREITERWLAEYNSERAHESLNNLTPEEYRLMAETPEISKSAWN
>Mature_233_residues
ALTVAAERYPRYGFKKLFQVLRRQGNAWNHKRVHRIYYLLKLNFRRKGKQRLPVRNPAPLATPEAMNQSWSIDFMHDALV
CGRRFRTFNVVDDYNREALAIEIDLNIPAQRVVRVLGRIVANRGYPLKMRMDNGPELVSLTLAQWSEEHGVMLEFIRPGK
QTQNAFIERFNRTYRTEILDFYLFRTLNEAREITERWLAEYNSERAHESLNNLTPEEYRLMAETPEISKSAWN

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=224, Percent_Identity=26.7857142857143, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1789981, Length=232, Percent_Identity=25.8620689655172, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 27777; Mature: 27646

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALTVAAERYPRYGFKKLFQVLRRQGNAWNHKRVHRIYYLLKLNFRRKGKQRLPVRNPAP
CEEEECHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
LATPEAMNQSWSIDFMHDALVCGRRFRTFNVVDDYNREALAIEIDLNIPAQRVVRVLGRI
CCCHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
VANRGYPLKMRMDNGPELVSLTLAQWSEEHGVMLEFIRPGKQTQNAFIERFNRTYRTEIL
HHCCCCEEEEEECCCCCEEEHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
DFYLFRTLNEAREITERWLAEYNSERAHESLNNLTPEEYRLMAETPEISKSAWN
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHEEHHCCCCCCCCCCC
>Mature Secondary Structure 
ALTVAAERYPRYGFKKLFQVLRRQGNAWNHKRVHRIYYLLKLNFRRKGKQRLPVRNPAP
EEEECHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
LATPEAMNQSWSIDFMHDALVCGRRFRTFNVVDDYNREALAIEIDLNIPAQRVVRVLGRI
CCCHHHCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
VANRGYPLKMRMDNGPELVSLTLAQWSEEHGVMLEFIRPGKQTQNAFIERFNRTYRTEIL
HHCCCCEEEEEECCCCCEEEHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
DFYLFRTLNEAREITERWLAEYNSERAHESLNNLTPEEYRLMAETPEISKSAWN
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHEEHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]