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The map label for this gene is dnaQ [H]

Identifier: 238893208

GI number: 238893208

Start: 1049870

End: 1050610

Strand: Direct

Name: dnaQ [H]

Synonym: KP1_1074

Alternate gene names: 238893208

Gene position: 1049870-1050610 (Clockwise)

Preceding gene: 238893206

Following gene: 238893210

Centisome position: 20.0

GC content: 54.66

Gene sequence:

>741_bases
ATGACCGCTATGAGCACTGCAATTACGCGCCAGATTGTTCTCGATACCGAAACCACCGGTATGAACCAGATCGGGGCACA
CTACGAAGGACACAAGATCATTGAGATCGGCGCCGTGGAGGTGATCAACCGCCGCCTGACCGGTAACAATTTTCACGTCT
ACCTGAAGCCCGATCGGCTGGTGGATCCTGAAGCATTCGGCGTACACGGGATCGCCGATGAGTTCCTGCTGGATAAACCT
ACCTTTGCCGAGGTGGCTGATGAGTTTATGGATTACATCCGCGGCGCGGAGCTGGTGATCCATAACGCCTCGTTCGATAT
CGGCTTTATGGATTATGAATTCAGTAAGCTAAACCGCGGCATCGGAAAAACCGAGACCTTTTGTAAAATCACCGACAGTT
TGGCGCTGGCGCGGAAAATGTTTCCAGGCAAGCGCAACAGCCTCGATGCGCTATGTTCGCGTTACGAAATAGACAACAGC
AAGCGTACGCTGCACGGGGCGTTGCTCGATGCCCAGATCCTTGCCGATGTCTATTTGATGATGACCGGCGGCCAGACTTC
GATGGCGTTCTCTATGGAAGGCGAAAGCCAGCAGCAGGCGGGAGAGATGGGAATTCAGCGCGTCGTCCGCGCCGGCAGTC
AGTTACGCGTGGTTTATGCCTCAGATGAAGAACTGGCGAACCATGAATCCCGCCTCGACCTGGTACAAAAGAAAGGCGGA
AGCTGCCTGTGGCGTGCCTGA

Upstream 100 bases:

>100_bases
ACCCAGGCAAGAGCCGTCGGTGAAAATTTCTACCTGTTTGAGCATCTCTGGTAGACTTCCTGTAATTGAAATCGATTTGT
AAACGATAAGTCTGACATAA

Downstream 100 bases:

>100_bases
TAGCCACTAAAATGAATTAAAAATAGGCGGTTGGGTGATTTTTGCAGCAAACGATTCAAAATGGTAGAAAAAGCGTTGAC
GGGGTAGAGGGGAATCCGTA

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTAMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKP
TFAEVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGIGKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNS
KRTLHGALLDAQILADVYLMMTGGQTSMAFSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGG
SCLWRA

Sequences:

>Translated_246_residues
MTAMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKP
TFAEVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGIGKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNS
KRTLHGALLDAQILADVYLMMTGGQTSMAFSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGG
SCLWRA
>Mature_245_residues
TAMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPT
FAEVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGIGKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSK
RTLHGALLDAQILADVYLMMTGGQTSMAFSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGGS
CLWRA

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=243, Percent_Identity=89.3004115226338, Blast_Score=462, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 27378; Mature: 27246

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRL
CCCHHHHHHEEEEEECCCCCCHHHCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEECCCCC
VDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRG
CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHCC
IGKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLM
CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHE
MTGGQTSMAFSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGG
EECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
SCLWRA
CEECCC
>Mature Secondary Structure 
TAMSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRL
CCHHHHHHEEEEEECCCCCCHHHCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEECCCCC
VDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRG
CCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHCC
IGKTETFCKITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLM
CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHE
MTGGQTSMAFSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQKKGG
EECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
SCLWRA
CEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3023634; 6316347; 3540531; 9278503; 1575709 [H]