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The map label for this gene is yafD [C]

Identifier: 238893202

GI number: 238893202

Start: 1044675

End: 1045481

Strand: Direct

Name: yafD [C]

Synonym: KP1_1068

Alternate gene names: 238893202

Gene position: 1044675-1045481 (Clockwise)

Preceding gene: 238893201

Following gene: 238893203

Centisome position: 19.9

GC content: 58.49

Gene sequence:

>807_bases
ATGCCCAAATTGCGAAAGAACACCTACGCCATGCGCTATGTCGCCGGACAACCTGCGGAGAGAATATTGCCTCCGGGGGC
GTTTGCGGGCGTGAGTCCGGTTTATCCCGCCGGCACGCCGTTAAGCAGCGATGAGAAGATCCGCGTGCTGGTATGGAATA
TCTTCAAGCAGCAGCGCGCAGAGTGGCAGTCGGTCCTCAAAAATTTCGGCAAAGATGCGCATTTGGTCCTGTTGCAGGAG
GCGCAAACCACCCCAGAACTGGTCCGGTTCGCGACTTCAAACTATCTGGCCGCCGATCAGGTGCCGGCGCTGGTATTGCC
GCAGCATCCTTCCGGCGTAATGACGCTGGCCTCCGCGCACCCCATCTATTGCTGTCCGCTGCGCGAGCGCGAGCCTATTT
TGCGATTGCCGAAATCGGCGTTAGTGACCGTTTATCCGCTGCCGAATGCGCGGTTGTTGATGGTAGTCAATATCCATGCC
GTCAACTTTAGCCTTGGCGTCGACGTCTACAGCAAACAGCTGCTGCCAATTGGCGATCAGATCGCCCATCACAGCGGGCC
GGTGATCATGGCCGGCGACTTCAATGCCTGGAGCCGGCCGCGGATGAATGCGCTGTACCGCTTTGCGCGTGAGATGTCGT
TACGCGAAGTTCGTTTCTCAGACGATCAGCGCCGCCGCGCGTTTGGTCGTCCCCTCGATTTTGTGTTCTACCGTGGGTTA
AGCGTGCACGATGCTTCCGTGCTGGTGACCCGCGCCTCCGACCACAACCCGCTACTAGTCGAATTCAGTCCCGGCAAGCC
TGATTAA

Upstream 100 bases:

>100_bases
AGGCTAAGGGTTTCTCGCAATTTGCATTGAAAGTGTATGGGAAAATCCCTATAACAGAATAACCAGTCGTCGTCGGGCTG
GTTTCTGTTATCGAGGATTA

Downstream 100 bases:

>100_bases
TTTAAGGTTGGTCAGGCCTGCCATGGGGCAGGCCTGCGCATGCATGGTGCTGCCTTTTATTACTCAAAAAAAACCGTAAG
GACAAGACAACATGACAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MPKLRKNTYAMRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRAEWQSVLKNFGKDAHLVLLQE
AQTTPELVRFATSNYLAADQVPALVLPQHPSGVMTLASAHPIYCCPLREREPILRLPKSALVTVYPLPNARLLMVVNIHA
VNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGL
SVHDASVLVTRASDHNPLLVEFSPGKPD

Sequences:

>Translated_268_residues
MPKLRKNTYAMRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRAEWQSVLKNFGKDAHLVLLQE
AQTTPELVRFATSNYLAADQVPALVLPQHPSGVMTLASAHPIYCCPLREREPILRLPKSALVTVYPLPNARLLMVVNIHA
VNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGL
SVHDASVLVTRASDHNPLLVEFSPGKPD
>Mature_267_residues
PKLRKNTYAMRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRAEWQSVLKNFGKDAHLVLLQEA
QTTPELVRFATSNYLAADQVPALVLPQHPSGVMTLASAHPIYCCPLREREPILRLPKSALVTVYPLPNARLLMVVNIHAV
NFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGLS
VHDASVLVTRASDHNPLLVEFSPGKPD

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=265, Percent_Identity=87.9245283018868, Blast_Score=492, Evalue=1e-141,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 30034; Mature: 29903

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLRKNTYAMRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRA
CCCCCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH
EWQSVLKNFGKDAHLVLLQEAQTTPELVRFATSNYLAADQVPALVLPQHPSGVMTLASAH
HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCEECCCCCEEEECCCCCCEEEEECCC
PIYCCPLREREPILRLPKSALVTVYPLPNARLLMVVNIHAVNFSLGVDVYSKQLLPIGDQ
CEEEECCCCCCHHHHCCCCCEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHH
IAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGL
HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHEEEECCC
SVHDASVLVTRASDHNPLLVEFSPGKPD
CCCCCEEEEEECCCCCCEEEEECCCCCC
>Mature Secondary Structure 
PKLRKNTYAMRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRA
CCCCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHH
EWQSVLKNFGKDAHLVLLQEAQTTPELVRFATSNYLAADQVPALVLPQHPSGVMTLASAH
HHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHCCCEECCCCCEEEECCCCCCEEEEECCC
PIYCCPLREREPILRLPKSALVTVYPLPNARLLMVVNIHAVNFSLGVDVYSKQLLPIGDQ
CEEEECCCCCCHHHHCCCCCEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHH
IAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGL
HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHEEEECCC
SVHDASVLVTRASDHNPLLVEFSPGKPD
CCCCCEEEEEECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA