Click here to switch to the map view.

The map label for this gene is yabI [H]

Identifier: 238893040

GI number: 238893040

Start: 860407

End: 861174

Strand: Direct

Name: yabI [H]

Synonym: KP1_0877

Alternate gene names: 238893040

Gene position: 860407-861174 (Clockwise)

Preceding gene: 238893039

Following gene: 238893045

Centisome position: 16.39

GC content: 61.33

Gene sequence:

>768_bases
ATGCAAGCATTGCTCGAACACTTTATTACCCAATCCACGGTCTACTCATTGTTAGCCGTGATGCTGGTGGCCTTTCTCGA
GTCGCTGGCGCTGGTGGGGCTTATCTTACCCGGCACGGTGATGATGGCTGGCCTTGGGGCGCTCATCGGCGGCGGCGAAG
TTAACTTCTGGCAGGCGTGGCTGGCGGGGATTGTCGGCTGCCTGCTGGGCGACTGGATTTCATTCTGGCTCGGCTGGCGC
TTTAAGAAGCCGTTGCACCGCTGGTCGTTTATGAAGAAAAACCGCGCCCTGCTGGAGAAAACCGAGCATGCGCTGCATCA
GCACAGCATGATCACCATTCTGATTGGCCGCTTTGTCGGACCGACGCGTCCGCTGGTGCCAATGGTCGCCGGGATGCTCG
ACCTGCCGGTGGCCAAGTTCGTGCTACCGAATATTATCGGCTGCCTGCTCTGGCCGCCGCTCTATTTCCTTCCGGGCATC
CTCGCCGGGGCGGCGATTGATATTCCGGCTGATGAAAACAGCGCCAGCTTTAAATGGCTGCTATTGGGGGCGGCGCTGCT
GGCCTGGCTGGCGGGATGGCTGTGCTGGCGGCTGTGGCGGAGCGCGAAAACCTCAGGCGATCGGCTGACCCGCTGGCTGC
CGCGCGGCCGACTGCTGTGGCTGTCGCCGCTGATGGTCGCGCTGGCGGCTACAGCGTTAACATTTGTCTTCCGCCATCCG
CTGATGCCGGTCTATCTGGCGATCCTGCACAAAGTCATCGCGCGCTGA

Upstream 100 bases:

>100_bases
CTTAAATGTCACAGCCAGTAAACTATTAAGACAATTGATGGCTTGACGACGGCGCGATGGCTTCGGAGAATCCGGGCTTC
GTTTTTTAACCGGGTACATT

Downstream 100 bases:

>100_bases
TCCCCATCAAATGCGAGGCGCTGCTGTGGCCGCTTAACAGCTCGGCGGTGGCGCCATCCCAGACAATGCGCCCTTCGGCG
ACCACCATCGAGCGCGGCGC

Product: putative integral membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWR
FKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGI
LAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHP
LMPVYLAILHKVIAR

Sequences:

>Translated_255_residues
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWR
FKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGI
LAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHP
LMPVYLAILHKVIAR
>Mature_255_residues
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWR
FKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGI
LAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHP
LMPVYLAILHKVIAR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1786252, Length=254, Percent_Identity=79.1338582677165, Blast_Score=410, Evalue=1e-116,
Organism=Escherichia coli, GI1788656, Length=182, Percent_Identity=29.1208791208791, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 28408; Mature: 28408

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHH
LLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LMPVYLAILHKVIAR
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHH
LLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
LMPVYLAILHKVIAR
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1630901; 9278503 [H]