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The map label for this gene is ynfL [H]

Identifier: 238892346

GI number: 238892346

Start: 97826

End: 98734

Strand: Direct

Name: ynfL [H]

Synonym: KP1_0101

Alternate gene names: 238892346

Gene position: 97826-98734 (Clockwise)

Preceding gene: 238892344

Following gene: 238892347

Centisome position: 1.86

GC content: 61.94

Gene sequence:

>909_bases
ATGACAACTTCGCGATTACATTCCCTGGATATTCGCCTGCTGCGCGCCTTTGCCGTGGTAGCGGAGGAAAATAACATCAG
CCGGGCGGCGCAGCGGTTATTTATCTCGCAGCCGCCGCTGACCCGCCATATCCGCCATCTGGAAGCGCAGCTGGGGGTGA
CGCTGTTTCAGCGCCATAGCAAAGGCCTGATCCTGACCGACGCGGGTAGAGAGGTGCTGGAGATGATTCAACCTCTGCTG
GCGCTCCAGGAACGCACGCTGGCGGCATTGAGTGAGCTCGCCGCCAACTCGCCGCAGGCTCTACGTCTGGGCGTGACGAC
GGCCTTCGAACAGGGCATTTTCGCCGCCGTTGAGGCTGCGCTGAGCGAACATACCCGCGCGTTGCATATCACCCGCCACG
CCTCACCGGCGCTGGCTCAGCAGGTACGCAAAGGCAAACTCGATGCGGCGCTGGTCGCGTTGCCGCTCAATACTGAAGGG
CTGCGCCTGCACCCATTGCCGTATCATGAGCCGCTCATTGCGGCATTACCGGCCTCCTGGCCGGAAGCCGCCAGGCCAGG
GCTGACGTTAAGCGCGCTCAATCATCGGCCGCTGTTCTGGTTTAAACGCGAGCGTAATCCTGGTTTCTTTGACTACACGC
GCCGCATTTTCGACCGGGCTGGCTATGCCCCGACGTATGTGGAAGAGCCGGCCGAGCATGATGTGCTGCTGGCGCGTATT
GCGCGCGGCGAAGGCATGATCCTGCTGCCGGCGTCCTTTTCCGCGATTCAGCGTCAGGGGGTGGCGTTCTGCCCGGTGGC
TGAGGGCGACGCGATGCCGTTAAGCCTTGGGGTGATTTATCCGCCTTACCAGGCAGAGTCCGTGCAGCAATGGCTTTCTC
TGCTGGATGGCATTCTGGCGACTGGCTAG

Upstream 100 bases:

>100_bases
GCTGGACATCGTTTTTTCCTCTCTGTGATGGTGCGTTAAGAGGAAGGGTAGGGAAGTGTGCCGGACTTGAGTAATACCCT
TTTCGTGATACCTTTTCAGT

Downstream 100 bases:

>100_bases
TCTCAGGCTGACTCGCGAGCCACCTTATATTGCCCACCGAGCCGCTTCCTGTGCGTGGCCAGGTGATCGGAAGATGAAAT
TTTTTCATGTAGGTGACCTA

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MTTSRLHSLDIRLLRAFAVVAEENNISRAAQRLFISQPPLTRHIRHLEAQLGVTLFQRHSKGLILTDAGREVLEMIQPLL
ALQERTLAALSELAANSPQALRLGVTTAFEQGIFAAVEAALSEHTRALHITRHASPALAQQVRKGKLDAALVALPLNTEG
LRLHPLPYHEPLIAALPASWPEAARPGLTLSALNHRPLFWFKRERNPGFFDYTRRIFDRAGYAPTYVEEPAEHDVLLARI
ARGEGMILLPASFSAIQRQGVAFCPVAEGDAMPLSLGVIYPPYQAESVQQWLSLLDGILATG

Sequences:

>Translated_302_residues
MTTSRLHSLDIRLLRAFAVVAEENNISRAAQRLFISQPPLTRHIRHLEAQLGVTLFQRHSKGLILTDAGREVLEMIQPLL
ALQERTLAALSELAANSPQALRLGVTTAFEQGIFAAVEAALSEHTRALHITRHASPALAQQVRKGKLDAALVALPLNTEG
LRLHPLPYHEPLIAALPASWPEAARPGLTLSALNHRPLFWFKRERNPGFFDYTRRIFDRAGYAPTYVEEPAEHDVLLARI
ARGEGMILLPASFSAIQRQGVAFCPVAEGDAMPLSLGVIYPPYQAESVQQWLSLLDGILATG
>Mature_301_residues
TTSRLHSLDIRLLRAFAVVAEENNISRAAQRLFISQPPLTRHIRHLEAQLGVTLFQRHSKGLILTDAGREVLEMIQPLLA
LQERTLAALSELAANSPQALRLGVTTAFEQGIFAAVEAALSEHTRALHITRHASPALAQQVRKGKLDAALVALPLNTEGL
RLHPLPYHEPLIAALPASWPEAARPGLTLSALNHRPLFWFKRERNPGFFDYTRRIFDRAGYAPTYVEEPAEHDVLLARIA
RGEGMILLPASFSAIQRQGVAFCPVAEGDAMPLSLGVIYPPYQAESVQQWLSLLDGILATG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=30.3754266211604, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI2367136, Length=287, Percent_Identity=29.616724738676, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787806, Length=251, Percent_Identity=29.0836653386454, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1790399, Length=287, Percent_Identity=25.7839721254355, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787530, Length=276, Percent_Identity=25.7246376811594, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788887, Length=261, Percent_Identity=24.5210727969349, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=257, Percent_Identity=29.1828793774319, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33252; Mature: 33121

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSRLHSLDIRLLRAFAVVAEENNISRAAQRLFISQPPLTRHIRHLEAQLGVTLFQRHS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
KGLILTDAGREVLEMIQPLLALQERTLAALSELAANSPQALRLGVTTAFEQGIFAAVEAA
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHH
LSEHTRALHITRHASPALAQQVRKGKLDAALVALPLNTEGLRLHPLPYHEPLIAALPASW
HHHCHHEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCCCHHHHCCCCC
PEAARPGLTLSALNHRPLFWFKRERNPGFFDYTRRIFDRAGYAPTYVEEPAEHDVLLARI
CHHCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHH
ARGEGMILLPASFSAIQRQGVAFCPVAEGDAMPLSLGVIYPPYQAESVQQWLSLLDGILA
HCCCCEEEECCCHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHC
TG
CC
>Mature Secondary Structure 
TTSRLHSLDIRLLRAFAVVAEENNISRAAQRLFISQPPLTRHIRHLEAQLGVTLFQRHS
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
KGLILTDAGREVLEMIQPLLALQERTLAALSELAANSPQALRLGVTTAFEQGIFAAVEAA
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHH
LSEHTRALHITRHASPALAQQVRKGKLDAALVALPLNTEGLRLHPLPYHEPLIAALPASW
HHHCHHEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCEEECCCCCCCCHHHHCCCCC
PEAARPGLTLSALNHRPLFWFKRERNPGFFDYTRRIFDRAGYAPTYVEEPAEHDVLLARI
CHHCCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHH
ARGEGMILLPASFSAIQRQGVAFCPVAEGDAMPLSLGVIYPPYQAESVQQWLSLLDGILA
HCCCCEEEECCCHHHHHHCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHC
TG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]