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The map label for this gene is rhaS [H]

Identifier: 238892322

GI number: 238892322

Start: 72252

End: 73088

Strand: Direct

Name: rhaS [H]

Synonym: KP1_0073

Alternate gene names: 238892322

Gene position: 72252-73088 (Clockwise)

Preceding gene: 238892312

Following gene: 238892323

Centisome position: 1.38

GC content: 57.35

Gene sequence:

>837_bases
ATGACCATATTGCACAGTACGGATTTCTTTAAGGCCGGGATCTCGACGGTGGCTATTGAACCCCGCCTCCCTCAGTCGGC
CTTTCCGGAACATCACCATGATTTCCATGAAATAGTTATCGTGGAGCAGGGATCGGGTATTCACGTCTTCAATGGCCAGC
CCTACACCATTGGCGGCGGTTCGGTCTGTTTTATCCGCGATCACGACCGCCATCTTTACGAGCACACGGATAATCTGTGT
CTGACCAATGTGCTCTATCGCGCGCCGGATGCGTTTCGCTTTCTCGCCGGGGTCAGTCAACTATTGCCCCAGGAACAGGA
AGGAAACTACCCCTCGCACTGGCGGGTGAATCAAACCGTCCTGCAACAGGTGCGGCATATCGTGGCGCAGATCGAGGCCG
TGGGGAGCGATACGGATACTCATGCCGTCGCCAGCCGTGAGATCCTGTTTATGCAGCTGCTGGTGCTGTTACGTAAAAGC
AGCCTTGCGGAAGAGGCCACCAACAACGATGCGCGGCTGAATCAGCTGTTGGCCTGGCTCGAAGACCATTTTGCGCAGGA
GATCTGCTGGGAGGAGGTGGCGGCGCAGTTTTCGCTGTCGCTGCGTACGCTGCACCGCCAGCTGAAGCAGCAGACCGGTC
TGACGCCACAGCGCTATCTTAATCGGGTGCGCCTGATGAAAGCCCGCCATCTGCTGCGCCACAGCGATGAAAGCGTGACT
GATATCGCTTATCGCTGCGGCTTCGGCGACAGTAACCACTTTTCGACGCTTTTTCGCCGGGAGTTCGACTGGTCGCCGCG
CGATATCCGTCAGGGGCGCGACGCCATTCTTCAGTAA

Upstream 100 bases:

>100_bases
GATTTACGAATTTCGCGGTCAAAAATTGAAGGCCGGATAGCCAACCCTTCATTACTATCAGCCGGTGACTGATAATTTTT
CTCATTACGAGGGTGGCATC

Downstream 100 bases:

>100_bases
CGCGAGAAGAGTCAACGTATTGCAGACTAAAAACGCGAATAATGCGCCGTTATCCGCGTTTGGAGTGTGAGCCGTGGCCG
GTCTGATTTTACGTAAAGAG

Product: transcriptional activator RhaS

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTILHSTDFFKAGISTVAIEPRLPQSAFPEHHHDFHEIVIVEQGSGIHVFNGQPYTIGGGSVCFIRDHDRHLYEHTDNLC
LTNVLYRAPDAFRFLAGVSQLLPQEQEGNYPSHWRVNQTVLQQVRHIVAQIEAVGSDTDTHAVASREILFMQLLVLLRKS
SLAEEATNNDARLNQLLAWLEDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLLRHSDESVT
DIAYRCGFGDSNHFSTLFRREFDWSPRDIRQGRDAILQ

Sequences:

>Translated_278_residues
MTILHSTDFFKAGISTVAIEPRLPQSAFPEHHHDFHEIVIVEQGSGIHVFNGQPYTIGGGSVCFIRDHDRHLYEHTDNLC
LTNVLYRAPDAFRFLAGVSQLLPQEQEGNYPSHWRVNQTVLQQVRHIVAQIEAVGSDTDTHAVASREILFMQLLVLLRKS
SLAEEATNNDARLNQLLAWLEDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLLRHSDESVT
DIAYRCGFGDSNHFSTLFRREFDWSPRDIRQGRDAILQ
>Mature_277_residues
TILHSTDFFKAGISTVAIEPRLPQSAFPEHHHDFHEIVIVEQGSGIHVFNGQPYTIGGGSVCFIRDHDRHLYEHTDNLCL
TNVLYRAPDAFRFLAGVSQLLPQEQEGNYPSHWRVNQTVLQQVRHIVAQIEAVGSDTDTHAVASREILFMQLLVLLRKSS
LAEEATNNDARLNQLLAWLEDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLLRHSDESVTD
IAYRCGFGDSNHFSTLFRREFDWSPRDIRQGRDAILQ

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=278, Percent_Identity=78.7769784172662, Blast_Score=456, Evalue=1e-130,
Organism=Escherichia coli, GI171474011, Length=266, Percent_Identity=34.9624060150376, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1788725, Length=88, Percent_Identity=35.2272727272727, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790391, Length=108, Percent_Identity=30.5555555555556, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32001; Mature: 31870

Theoretical pI: Translated: 6.76; Mature: 6.76

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILHSTDFFKAGISTVAIEPRLPQSAFPEHHHDFHEIVIVEQGSGIHVFNGQPYTIGGG
CEEECCCHHHHHCCHHEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEECCC
SVCFIRDHDRHLYEHTDNLCLTNVLYRAPDAFRFLAGVSQLLPQEQEGNYPSHWRVNQTV
CEEEEECCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LQQVRHIVAQIEAVGSDTDTHAVASREILFMQLLVLLRKSSLAEEATNNDARLNQLLAWL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLLRHSDESVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH
DIAYRCGFGDSNHFSTLFRREFDWSPRDIRQGRDAILQ
HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TILHSTDFFKAGISTVAIEPRLPQSAFPEHHHDFHEIVIVEQGSGIHVFNGQPYTIGGG
EEECCCHHHHHCCHHEEECCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCEEECCC
SVCFIRDHDRHLYEHTDNLCLTNVLYRAPDAFRFLAGVSQLLPQEQEGNYPSHWRVNQTV
CEEEEECCCHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHH
LQQVRHIVAQIEAVGSDTDTHAVASREILFMQLLVLLRKSSLAEEATNNDARLNQLLAWL
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
EDHFAQEICWEEVAAQFSLSLRTLHRQLKQQTGLTPQRYLNRVRLMKARHLLRHSDESVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHH
DIAYRCGFGDSNHFSTLFRREFDWSPRDIRQGRDAILQ
HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA