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The map label for this gene is ydcN [C]

Identifier: 238892309

GI number: 238892309

Start: 56691

End: 57293

Strand: Direct

Name: ydcN [C]

Synonym: KP1_0059

Alternate gene names: 238892309

Gene position: 56691-57293 (Clockwise)

Preceding gene: 238892306

Following gene: 238892310

Centisome position: 1.08

GC content: 61.36

Gene sequence:

>603_bases
ATGATCGTTTTTCAAGGCGAACGAATTGTTCGATATAAAAAACAAGGGGCGGGTATGACACAGCCAATCAGCGTTATCGC
CAAAAGTCTGGTGCGGGAGCGGGCGCGGACCGGGCTTTCGCTGGCGGAAGTCGCGCGTCGGGCGGGTATCGCAAAATCCA
CGCTATCGCAACTGGAGTCCGGCAACGGCAACCCGAGTCTGGAAACGCTGTGGTCGCTCTGCGTAGCGCTGGATATTCCA
TTTGCCAGGCTGCTTGAGCCGCAGGTGAACAAAACGCAGGTGATCCGCCGCGGCGAGGGGACCAAAGTGGTGGCAGAGCA
GGCGAACTATCAGGCCATTTTGCTGGCCGCCTGTCCGCCCGGCGCGCGTCGGGACATCTATTTGCTGCTCACCCAGCCCG
GCGCCGACCGCATTTCGCATCCGCATCCGCCAGGCTCGGTGGAACATATTATCGTCACCCAGGGGCGGGCGCGGGTAGGG
CTGACGTCGGCGCCGGAAGAGCTCGGCGAGGGCGACTATATCTGCTACCCGGCGGATCAGGAGCATGTTTTTCAGGCGCT
GGAGCCGGATACGCAGGCCCTGCTGATCGCTGAGCAAAACTGA

Upstream 100 bases:

>100_bases
CCAAAACAATCGCTTTTATCGTGTCTCCGCTGAGACTGGAGAGAGTTTGTTTCATATCACTTAGCCATATCGAACGAATT
TCCATTATAATGAACACATA

Downstream 100 bases:

>100_bases
CATCGCGTCGGCGGGGGACGCGCGCTCGCTGGACGTCATAGCCATATTGCGGGAAACTAGCTTTCCTATGCGAAAACAGG
GATTTTTATGTCGCTGAAAG

Product: putative helix-turn-helix regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator XRE Family With Cupin Sensor; Helix-Turn-Helix Domain Protein; HTH-Type Transcriptional Regulator; Cupin Domain Protein; Transcriptional Regulatory Protein; Xre Family xin-Antitoxin System Antitoxin Component; Helix-Turn-Helix Regulatory Protein; Transcriptional Regulator XRE Family Protein; Hth-Type Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Cro/CI Family Protein; Transcriptional Regulator Cro/CI Family; Helix-Turn-Helix Protein; Transcriptional Regulator Xre Family; Transcriptional Regulator XRE

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MIVFQGERIVRYKKQGAGMTQPISVIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIP
FARLLEPQVNKTQVIRRGEGTKVVAEQANYQAILLAACPPGARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGRARVG
LTSAPEELGEGDYICYPADQEHVFQALEPDTQALLIAEQN

Sequences:

>Translated_200_residues
MIVFQGERIVRYKKQGAGMTQPISVIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIP
FARLLEPQVNKTQVIRRGEGTKVVAEQANYQAILLAACPPGARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGRARVG
LTSAPEELGEGDYICYPADQEHVFQALEPDTQALLIAEQN
>Mature_200_residues
MIVFQGERIVRYKKQGAGMTQPISVIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLESGNGNPSLETLWSLCVALDIP
FARLLEPQVNKTQVIRRGEGTKVVAEQANYQAILLAACPPGARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGRARVG
LTSAPEELGEGDYICYPADQEHVFQALEPDTQALLIAEQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=161, Percent_Identity=23.6024844720497, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21742; Mature: 21742

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFQGERIVRYKKQGAGMTQPISVIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLES
CEEECCCHHEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHC
GNGNPSLETLWSLCVALDIPFARLLEPQVNKTQVIRRGEGTKVVAEQANYQAILLAACPP
CCCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHEECCCCCEEEEECCCCEEEEEEECCC
GARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGRARVGLTSAPEELGEGDYICYPADQ
CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCHHHHCCCCEEEECCCH
EHVFQALEPDTQALLIAEQN
HHHHHHCCCCCEEEEEEECC
>Mature Secondary Structure
MIVFQGERIVRYKKQGAGMTQPISVIAKSLVRERARTGLSLAEVARRAGIAKSTLSQLES
CEEECCCHHEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHC
GNGNPSLETLWSLCVALDIPFARLLEPQVNKTQVIRRGEGTKVVAEQANYQAILLAACPP
CCCCCCHHHHHHHHHHHCCCHHHHCCCCCCHHHHEECCCCCEEEEECCCCEEEEEEECCC
GARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGRARVGLTSAPEELGEGDYICYPADQ
CCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCHHHHCCCCEEEECCCH
EHVFQALEPDTQALLIAEQN
HHHHHHCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA