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The map label for this gene is rbsD

Identifier: 238892263

GI number: 238892263

Start: 7642

End: 8061

Strand: Direct

Name: rbsD

Synonym: KP1_0007

Alternate gene names: 238892263

Gene position: 7642-8061 (Clockwise)

Preceding gene: 238892262

Following gene: 238892264

Centisome position: 0.15

GC content: 54.29

Gene sequence:

>420_bases
ATGAAAAAAGGCACCGTACTTAACGCTGATATTTCCGCGGTCATTTCCCGCCTGGGCCACACCGATACGCTGGTGGTCTG
CGATGCCGGATTACCGGTTCCCCGCAGCAGCACGCGCATTGATATGGCGCTGACTCAGGGCGTACCTTCATTTATGCAGG
TGCTGGAAGTGGTGACGACGGAAATGCAGGTTGAAGCGGCTGTCATCGCGGAAGAGATTAAAACCCATAATCCGCAGCTC
CACGCGACGTTGCTCACTCACCTCGAGCAGCTGCAGCAGCACCAGGGAAATACCATTGAAATTCGTTACACCAGCCATGA
GCAGTTCAAAAAACAAACCGCAGACAGTCAGGCGGTAATTCGCAGCGGGGAGTGTTCCCCGTTTGCGAATATCATTCTCT
GTGCCGGCGTCACGTTCTGA

Upstream 100 bases:

>100_bases
ATGGCGATCACATTTCTCTCTTCTGGTGATGGTTTTCTGCTCACGCATTGATAATAATTATTTTAGCGAAACGTTTCGCT
AGTGGAGCAAAAGAGAAAAA

Downstream 100 bases:

>100_bases
GGTCGCCGTCATGGAAGCCTTATTGCAACTGAAAGGGATCGACAAAGCGTTCCCTGGCGTCAAGGCGCTCTCCGGCGCGG
CGCTGAATGTCTATGCCGGC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKGTVLNADISAVISRLGHTDTLVVCDAGLPVPRSSTRIDMALTQGVPSFMQVLEVVTTEMQVEAAVIAEEIKTHNPQL
HATLLTHLEQLQQHQGNTIEIRYTSHEQFKKQTADSQAVIRSGECSPFANIILCAGVTF

Sequences:

>Translated_139_residues
MKKGTVLNADISAVISRLGHTDTLVVCDAGLPVPRSSTRIDMALTQGVPSFMQVLEVVTTEMQVEAAVIAEEIKTHNPQL
HATLLTHLEQLQQHQGNTIEIRYTSHEQFKKQTADSQAVIRSGECSPFANIILCAGVTF
>Mature_139_residues
MKKGTVLNADISAVISRLGHTDTLVVCDAGLPVPRSSTRIDMALTQGVPSFMQVLEVVTTEMQVEAAVIAEEIKTHNPQL
HATLLTHLEQLQQHQGNTIEIRYTSHEQFKKQTADSQAVIRSGECSPFANIILCAGVTF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=89.2086330935252, Blast_Score=263, Evalue=2e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_KLEP3 (B5XZK8)

Other databases:

- EMBL:   CP000964
- RefSeq:   YP_002241271.1
- ProteinModelPortal:   B5XZK8
- GeneID:   6934967
- GenomeReviews:   CP000964_GR
- KEGG:   kpe:KPK_5528
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15168; Mature: 15168

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKGTVLNADISAVISRLGHTDTLVVCDAGLPVPRSSTRIDMALTQGVPSFMQVLEVVTT
CCCCCEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHHCCCHHHHHHHHHHHH
EMQVEAAVIAEEIKTHNPQLHATLLTHLEQLQQHQGNTIEIRYTSHEQFKKQTADSQAVI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCHHHHH
RSGECSPFANIILCAGVTF
CCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MKKGTVLNADISAVISRLGHTDTLVVCDAGLPVPRSSTRIDMALTQGVPSFMQVLEVVTT
CCCCCEECCCHHHHHHHHCCCCEEEEECCCCCCCCCCCEEHHHHHCCCHHHHHHHHHHHH
EMQVEAAVIAEEIKTHNPQLHATLLTHLEQLQQHQGNTIEIRYTSHEQFKKQTADSQAVI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCHHHHH
RSGECSPFANIILCAGVTF
CCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA