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The map label for this gene is xylH [H]

Identifier: 339905972

GI number: 339905972

Start: 2410586

End: 2411782

Strand: Reverse

Name: xylH [H]

Synonym: NA

Alternate gene names: 339905972

Gene position: 2411782-2410586 (Counterclockwise)

Preceding gene: 238027790

Following gene: 238027788

Centisome position: 61.74

GC content: 71.35

Gene sequence:

>1197_bases
ATGACACCCGAGACGACCACCCAGGCCGCCGACCGCGCGGCCCGCCCGGCGGGCGCCGGCGGCACCGCGCAGCAGCTGCG
CCGGCTGTTCGCGCGCTACAAGATCCTCGCGCTGCTGATCGCGGTGGCGGCGATCTGGCTGCTGTTTTCGGTGCTGACCG
ACGGCGCGTTCATCACGCCGCGCAACCTGTCCAACCTGCTGCGGCAGATGTCGATCACCGGCATGCTGGCCTGCGGGATG
GTGTTCGTGATCATCGCCGGCGAGATCGACCTGTCGGTGGGCTCGCTGCTCGGCCTGCTGGGCGGCGTGGCGGCGATCCT
CGAGCTCGGCTGGCCGATCGCGGCGACCGTGCCGGTGGTGATGGTGCTCGGCGTGGCGGCGGGCCTCTTCAACGGCTGGT
GGTCCACCTACCGGGGCGTGCCGTCGTTCATCGTCGGGCTGGGCGGCATGCTGGCCTATCGCGGCATCCTGCTCGGCATC
ACGCATGGCGCGACCATCGCGCCGGTCTCGGACGGCTTCGTGCAGATCGGCCAGGGCTACGTGCCGCCGCGCATCGGCGA
CGCCATCGCGCTGCTGATCGTGGTGCTGCTGGTGGCGGTGACGGTGCGCCAGCGGCGCGCGCGGCGCCGCTACCAGCTCG
AGGTCGCGCCGCTCTGGCAGGACGTCGCCAAGCTGGTCGCGGCCGGGCTGATCGTGGCCGCGTTCGTGGCCACGCTCGAC
AGCTACGGCGGGATCCCCGTGCCCGTGCTGGTGGTGCTCGCGCTGCTCGGCATCTTCTCGTGGGTGGCCACCCAGACCGT
GTTCGGCCGGCGCATCTACTCGGTCGGCTCGAACCTGGAGGCCACGCGCCTGTCGGGCATCAACACCGACCGCGTGAAAC
TCGCGATCTTCGGGCTGATGGGGCTGATGTGCGCGTTCGGCGGCATCGTCAACACCGCGCGGCTCGCGGCCGGCTCGCCG
TCGGCGGGCAACATGGGCGAGCTCGATGCGATCGCCGCCTGCTTCATCGGCGGCACCTCGATGCGCGGCGGCGCGGGCAC
CGTGCACGGCGCGCTGATCGGCGCGCTGGTGATGGCCAGCCTCGACAACGGCATGTCGATGCTCGACGTGGACGCCTACT
GGCAGATGATCGTCAAGGGCGGGATCCTGGTGCTGGCCGTCTGGATTGACGTGATGTCGCGCGCCGGGCGCCGCTAG

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: D-xylose ABC transporter inner membrane subunit

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:
NA

Sequences:

>Translated_398_residues
MTPETTTQAADRAARPAGAGGTAQQLRRLFARYKILALLIAVAAIWLLFSVLTDGAFITPRNLSNLLRQMSITGMLACGM
VFVIIAGEIDLSVGSLLGLLGGVAAILELGWPIAATVPVVMVLGVAAGLFNGWWSTYRGVPSFIVGLGGMLAYRGILLGI
THGATIAPVSDGFVQIGQGYVPPRIGDAIALLIVVLLVAVTVRQRRARRRYQLEVAPLWQDVAKLVAAGLIVAAFVATLD
SYGGIPVPVLVVLALLGIFSWVATQTVFGRRIYSVGSNLEATRLSGINTDRVKLAIFGLMGLMCAFGGIVNTARLAAGSP
SAGNMGELDAIAACFIGGTSMRGGAGTVHGALIGALVMASLDNGMSMLDVDAYWQMIVKGGILVLAVWIDVMSRAGRR
>Mature_397_residues
TPETTTQAADRAARPAGAGGTAQQLRRLFARYKILALLIAVAAIWLLFSVLTDGAFITPRNLSNLLRQMSITGMLACGMV
FVIIAGEIDLSVGSLLGLLGGVAAILELGWPIAATVPVVMVLGVAAGLFNGWWSTYRGVPSFIVGLGGMLAYRGILLGIT
HGATIAPVSDGFVQIGQGYVPPRIGDAIALLIVVLLVAVTVRQRRARRRYQLEVAPLWQDVAKLVAAGLIVAAFVATLDS
YGGIPVPVLVVLALLGIFSWVATQTVFGRRIYSVGSNLEATRLSGINTDRVKLAIFGLMGLMCAFGGIVNTARLAAGSPS
AGNMGELDAIAACFIGGTSMRGGAGTVHGALIGALVMASLDNGMSMLDVDAYWQMIVKGGILVLAVWIDVMSRAGRR

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=363, Percent_Identity=53.9944903581267, Blast_Score=338, Evalue=5e-94,
Organism=Escherichia coli, GI1790191, Length=148, Percent_Identity=45.2702702702703, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1790524, Length=363, Percent_Identity=29.4765840220386, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788896, Length=162, Percent_Identity=38.8888888888889, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI145693152, Length=383, Percent_Identity=26.6318537859008, Blast_Score=115, Evalue=7e-27,
Organism=Escherichia coli, GI1788471, Length=365, Percent_Identity=29.8630136986301, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787793, Length=338, Percent_Identity=25.7396449704142, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082395, Length=136, Percent_Identity=33.8235294117647, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 41520; Mature: 41389

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TPETTTQAADRAARPAGAGGTAQQLRRLFARYKILALLIAVAAIWLLFSVLTDGAFITP
CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECH
RNLSNLLRQMSITGMLACGMVFVIIAGEIDLSVGSLLGLLGGVAAILELGWPIAATVPVV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
MVLGVAAGLFNGWWSTYRGVPSFIVGLGGMLAYRGILLGITHGATIAPVSDGFVQIGQGY
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEECCCCEECCCCCCHHHHCCCC
VPPRIGDAIALLIVVLLVAVTVRQRRARRRYQLEVAPLWQDVAKLVAAGLIVAAFVATLD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SYGGIPVPVLVVLALLGIFSWVATQTVFGRRIYSVGSNLEATRLSGINTDRVKLAIFGLM
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHH
GLMCAFGGIVNTARLAAGSPSAGNMGELDAIAACFIGGTSMRGGAGTVHGALIGALVMAS
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LDNGMSMLDVDAYWQMIVKGGILVLAVWIDVMSRAGRR
HCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]