| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028901
Identifier: 238028901
GI number: 238028901
Start: 3827641
End: 3828411
Strand: Reverse
Name: 238028901
Synonym: bglu_1g33660
Alternate gene names: NA
Gene position: 3828411-3827641 (Counterclockwise)
Preceding gene: 238028903
Following gene: 238028897
Centisome position: 98.0
GC content: 70.04
Gene sequence:
>771_bases ATGTCCCCACAGCATTCGGAGTTGATTCGCGCCCAGATCGACGCATTGCGCGAACACGGTTACGTGGTCGTGCCGGGGCT GGTCGCGCCCGAGACTTGCGCCGCCTTGAAGGCGGTTGCCGAGCGCCAGCTGCGCGAGGCCGCCGAGCCGCTCGAATTCG AGGCGGACCTGCGCTATCCGGGCGCGCCGCAGTCGAAGGACGCACCGGGCGGCCGCACCGTGCGCCGCCTGCTCGACGCC TACCAGCGCGCGCCCGAGTTCGCCGCGCGTGCTACCGCGCCCGAGATCGCCGCCTGGCTGCGGGAGTACTTCGGTGAGGC GGCGCTGCTTTCGCGCGCGCATCACAACTGCATGATGACGAAGCACCCGCGGTACGGCAGCCTGACCGGCTGGCACCGCG ACTTTCGCTACTGGGCGTTCGAGCGCGCGGATCTCGTGTCGGTCTGGCTCGCGATCGGCGCGGAGACCGACGGCAACGGC GCGCTGTGGCTCGTGCCCGGCTCGCACAAGGCCGAGCTCGGTGCCGACTGCTTCGACGAGGCGAAGTTCTTCCGCGGCGA CCTGCCTGCCAACCGCGCGTTGATCGAGCGCGCGGTGTGCCCCGAACTCGGCCCCGGCGACGTGGTGTTCTTCCACTGCA ACACGCTGCATTCGGCCGGCCAGAACCGCAGCGACCAGGTGAAGTTCTCGCTCGTCTACACCTATCACGGCGAGAGCAAC CGGCCGGTGCCCGGCTCGCGCTCGGCGTCGAAGCCCGAGGTGAGGCTCTGA
Upstream 100 bases:
>100_bases CGGAGCGCGATCCGTGCGCGGTCGTTGACAATGTCGGTTTCCGGATCGATCCCCGCCGTCTTACAATCGACGCATTCATA AGAACGACATCGAGCCCGCC
Downstream 100 bases:
>100_bases CGCGCGGCGGCGGATGCGGCGTCGCGGCCGACGGCCGTCAGCGCCGGCCGCCCGGCATCGCCAGGCCGATCAGGCCGGCC AGCGTCGCGACCGCGCCGCC
Product: Phytanoyl-CoA dioxygenase family
Products: NA
Alternate protein names: Dioxygenase; Deoxygenase; L-Proline 4-Hydroxylase; Hypophosphite Dioxygenase; Potassium Channel Protein; Type I Secretion Membrane Fusion Protein HlyD; Phytanoyl-CoA Deoxygenase Family Protein; Phytanoyl-CoA Dioxygenase Family Protein; Phytanoyl-CoA Dioxygenase PhyH Family
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MSPQHSELIRAQIDALREHGYVVVPGLVAPETCAALKAVAERQLREAAEPLEFEADLRYPGAPQSKDAPGGRTVRRLLDA YQRAPEFAARATAPEIAAWLREYFGEAALLSRAHHNCMMTKHPRYGSLTGWHRDFRYWAFERADLVSVWLAIGAETDGNG ALWLVPGSHKAELGADCFDEAKFFRGDLPANRALIERAVCPELGPGDVVFFHCNTLHSAGQNRSDQVKFSLVYTYHGESN RPVPGSRSASKPEVRL
Sequences:
>Translated_256_residues MSPQHSELIRAQIDALREHGYVVVPGLVAPETCAALKAVAERQLREAAEPLEFEADLRYPGAPQSKDAPGGRTVRRLLDA YQRAPEFAARATAPEIAAWLREYFGEAALLSRAHHNCMMTKHPRYGSLTGWHRDFRYWAFERADLVSVWLAIGAETDGNG ALWLVPGSHKAELGADCFDEAKFFRGDLPANRALIERAVCPELGPGDVVFFHCNTLHSAGQNRSDQVKFSLVYTYHGESN RPVPGSRSASKPEVRL >Mature_255_residues SPQHSELIRAQIDALREHGYVVVPGLVAPETCAALKAVAERQLREAAEPLEFEADLRYPGAPQSKDAPGGRTVRRLLDAY QRAPEFAARATAPEIAAWLREYFGEAALLSRAHHNCMMTKHPRYGSLTGWHRDFRYWAFERADLVSVWLAIGAETDGNGA LWLVPGSHKAELGADCFDEAKFFRGDLPANRALIERAVCPELGPGDVVFFHCNTLHSAGQNRSDQVKFSLVYTYHGESNR PVPGSRSASKPEVRL
Specific function: Unknown
COG id: COG5285
COG function: function code Q; Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI5453884, Length=218, Percent_Identity=27.5229357798165, Blast_Score=80, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28378; Mature: 28247
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPQHSELIRAQIDALREHGYVVVPGLVAPETCAALKAVAERQLREAAEPLEFEADLRYP CCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCC GAPQSKDAPGGRTVRRLLDAYQRAPEFAARATAPEIAAWLREYFGEAALLSRAHHNCMMT CCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHCCEEC KHPRYGSLTGWHRDFRYWAFERADLVSVWLAIGAETDGNGALWLVPGSHKAELGADCFDE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHH AKFFRGDLPANRALIERAVCPELGPGDVVFFHCNTLHSAGQNRSDQVKFSLVYTYHGESN HHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCEEEEEEEEEEECCCC RPVPGSRSASKPEVRL CCCCCCCCCCCCCCCC >Mature Secondary Structure SPQHSELIRAQIDALREHGYVVVPGLVAPETCAALKAVAERQLREAAEPLEFEADLRYP CCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCC GAPQSKDAPGGRTVRRLLDAYQRAPEFAARATAPEIAAWLREYFGEAALLSRAHHNCMMT CCCCCCCCCCHHHHHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHCCEEC KHPRYGSLTGWHRDFRYWAFERADLVSVWLAIGAETDGNGALWLVPGSHKAELGADCFDE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCHHHHH AKFFRGDLPANRALIERAVCPELGPGDVVFFHCNTLHSAGQNRSDQVKFSLVYTYHGESN HHHHCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCHHHCCCCCCCEEEEEEEEEEECCCC RPVPGSRSASKPEVRL CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA