| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is fliF [H]
Identifier: 238028887
GI number: 238028887
Start: 3811172
End: 3812971
Strand: Direct
Name: fliF [H]
Synonym: bglu_1g33520
Alternate gene names: 238028887
Gene position: 3811172-3812971 (Clockwise)
Preceding gene: 238028881
Following gene: 238028888
Centisome position: 97.56
GC content: 70.28
Gene sequence:
>1800_bases ATGGAATCGCAGGCCAACTCGCTGATCAACCCAGACGCGCGCAACGCCGTCGCCGGCACGTCGCCGAACGCGACCGCCGC GGCCGGCACGTTGCCGGGCGCCGGCGCGGGCGGCGCAGACTTCGGCATGGGCGGTTTCGCCGAACGCTTCTCCGGGCTGC CAGGCATGTCGCGGATGCGCACCAACCCGAAGCTGCCGTTCCTGATCATCACCGCGCTGGCGATCGCCGCGATCGTCGCG CTGGTGCTCTGGAGCCGCGCCCCCGACTACCGGGTGCTGTACAGCAACCTGTCGGACCGCGACGGCGGCGCGATCATTAC CGCCCTGCAGCAAGCCAATATTCCCTATCAGTTCGCCGACGCCGGCGGCGCGATCCTGGTGCCGGCCAGCCAGGTCCACG AAACGCGCCTGAGGCTGGCCGCGATGGGCCTGCCCAAGGGCGGCTCGGTGGGCTTCGAGCTGATGGACAACCAGAAGTTC GGCATCAGCCAGTTCGCCGAGCAGGTCAACTACCAGCGCGCGCTCGAGGGCGAGCTGGAGCGCACCATCGCCTCGATCAA CGCGGTGCGCAGCGCGCGCGTGCATCTGGCGATCCCCAAGCCGTCGGTGTTCGTGCGCGATCGCGAGGCGCCGAGCGCGT CGGTGTTCGTCGATCTCTACCCGGGCCGCGTGCTCGACGACGGCCAGGTGCTGGCGATCACGCGCATGGTGGCCTCGGGC GTGCCCGACATGCCGGCCAAGAACGTCACGATCGTCGACCAGGACGGCAACCTGCTGAGCCAGCAGCCGTCGTCGTCCGG GCTCGACGCGAACCAGCTCAAGTACGTGCAGCAGGTCGAGCACAACACCCAGAAGCGCATCGACGCGATCCTCGCGCCGA TGTTCGGCGCCGGCAACACGCGCTCGCAGGTCAGCGCCGACATCGATTTCACCAGGAGCGAGCAGACCTCGGAGAGCTAC GCGCCGAACGGCACGCAGCAGCAGGCGGCGATCCGCAGCCAGCAGACCTCGTCGTCCGTCGAGAGCGCGCAAAGCGGCGC GGGCGGCGTGCCGGGCGCGCTGTCGAACACGCCGCCGCAGCCGGCCTCGGCGCCGATCACGGGCGCGAGCGGCGCGGCCG GCACGCCGCCCACGCCGATCAGCGACCGCAAGGACTCGACCACCAACTACGAGCTGGACAAGACGGTGCGCCACACCGAG GCGCCGACGGGCGGCATCAAGCGGCTGTCGGTGGCGGTGGTGGTCAACAACCTGCCGGTGGTCGACGCCAAGGGCCACGT GACGATGCAGCCGCTCACGGCCGACAAGCTCAAGCAGGTCGAGCAGCTCGTGAAGGACGCGATGGGCTACGACGCGAAGC GCGGCGACTCGGTGAACGTGGTCAACAGCGTGTTCACCACCACGGCCGATCCGCTCGCCGACCTGCCGTGGTGGCGCCAG CCCGACATGATCGCGCTGGCCAAGGACGCCGCGAAGTGGCTCGGCATCGCCGCCGCGGCCGCCGCGCTGTACTTCATGTT CGTGCGCCCGGCCATGCGCCGCGCGTTCCCGCCGCCCGAGGCGGCGGTCGCCAACCCGGCGCTGGCAGCCGCGCTGGGCA GCCCCGACGAGCCCGCGCTCGACGGCCTGCCGGCGCCCGACTCGGTGGTCGCCGAGGATTCGCCCGAAGCGGCGCTGCTG GCCTTCGAGGCCGACAAGCACCGCTATGAACGCAACCTAGACTACGCGAAGATGATCGCTCGGCAGGATCCGAAGATCGT CGCGGCGGTCGTCAAGAATTGGGTGTCCGATGAGCGCTGA
Upstream 100 bases:
>100_bases GTTCACCGGATCGCCGCTGGACGCGGTCCGGATAATCCGATCCTGGTGTCATTGTCCGTCCGCTCGTCGAGCGGCAGCCC GCTGTGGAGAACCCCGACGC
Downstream 100 bases:
>100_bases AGGCCTGACCAAGAGCGCGCTGCTGCTGATGTCGATCGGCGAGGAAGAGGCGGCGCAGGTATTCAAGTTCCTGGCCCCGC GCGAGGTCCAGAAGATCGGC
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 599; Mature: 599
Protein sequence:
>599_residues MESQANSLINPDARNAVAGTSPNATAAAGTLPGAGAGGADFGMGGFAERFSGLPGMSRMRTNPKLPFLIITALAIAAIVA LVLWSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMGLPKGGSVGFELMDNQKF GISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKPSVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASG VPDMPAKNVTIVDQDGNLLSQQPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESY APNGTQQQAAIRSQQTSSSVESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPISDRKDSTTNYELDKTVRHTE APTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADKLKQVEQLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLPWWRQ PDMIALAKDAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEAAVANPALAAALGSPDEPALDGLPAPDSVVAEDSPEAALL AFEADKHRYERNLDYAKMIARQDPKIVAAVVKNWVSDER
Sequences:
>Translated_599_residues MESQANSLINPDARNAVAGTSPNATAAAGTLPGAGAGGADFGMGGFAERFSGLPGMSRMRTNPKLPFLIITALAIAAIVA LVLWSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMGLPKGGSVGFELMDNQKF GISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKPSVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASG VPDMPAKNVTIVDQDGNLLSQQPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESY APNGTQQQAAIRSQQTSSSVESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPISDRKDSTTNYELDKTVRHTE APTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADKLKQVEQLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLPWWRQ PDMIALAKDAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEAAVANPALAAALGSPDEPALDGLPAPDSVVAEDSPEAALL AFEADKHRYERNLDYAKMIARQDPKIVAAVVKNWVSDER >Mature_599_residues MESQANSLINPDARNAVAGTSPNATAAAGTLPGAGAGGADFGMGGFAERFSGLPGMSRMRTNPKLPFLIITALAIAAIVA LVLWSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFADAGGAILVPASQVHETRLRLAAMGLPKGGSVGFELMDNQKF GISQFAEQVNYQRALEGELERTIASINAVRSARVHLAIPKPSVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASG VPDMPAKNVTIVDQDGNLLSQQPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNTRSQVSADIDFTRSEQTSESY APNGTQQQAAIRSQQTSSSVESAQSGAGGVPGALSNTPPQPASAPITGASGAAGTPPTPISDRKDSTTNYELDKTVRHTE APTGGIKRLSVAVVVNNLPVVDAKGHVTMQPLTADKLKQVEQLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLPWWRQ PDMIALAKDAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEAAVANPALAAALGSPDEPALDGLPAPDSVVAEDSPEAALL AFEADKHRYERNLDYAKMIARQDPKIVAAVVKNWVSDER
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=575, Percent_Identity=45.5652173913043, Blast_Score=475, Evalue=1e-135,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 63208; Mature: 63208
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESQANSLINPDARNAVAGTSPNATAAAGTLPGAGAGGADFGMGGFAERFSGLPGMSRMR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHC TNPKLPFLIITALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFAD CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEHHHCCCCEEEEC AGGAILVPASQVHETRLRLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRALEGELE CCCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH RTIASINAVRSARVHLAIPKPSVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASG HHHHHHHHHHHCEEEEECCCCCEEEECCCCCCCEEEEEECCCEEECCCCCHHHHHHHHCC VPDMPAKNVTIVDQDGNLLSQQPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNT CCCCCCCCEEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RSQVSADIDFTRSEQTSESYAPNGTQQQAAIRSQQTSSSVESAQSGAGGVPGALSNTPPQ CCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PASAPITGASGAAGTPPTPISDRKDSTTNYELDKTVRHTEAPTGGIKRLSVAVVVNNLPV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCHHEEEEEEEECCCCE VDAKGHVTMQPLTADKLKQVEQLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLPWWRQ EECCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCC PDMIALAKDAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEAAVANPALAAALGSPDEPAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCCCCCC DGLPAPDSVVAEDSPEAALLAFEADKHRYERNLDYAKMIARQDPKIVAAVVKNWVSDER CCCCCCCCCCCCCCCCEEEEEEECHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MESQANSLINPDARNAVAGTSPNATAAAGTLPGAGAGGADFGMGGFAERFSGLPGMSRMR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHC TNPKLPFLIITALAIAAIVALVLWSRAPDYRVLYSNLSDRDGGAIITALQQANIPYQFAD CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEHHHCCCCEEEEC AGGAILVPASQVHETRLRLAAMGLPKGGSVGFELMDNQKFGISQFAEQVNYQRALEGELE CCCEEEECHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH RTIASINAVRSARVHLAIPKPSVFVRDREAPSASVFVDLYPGRVLDDGQVLAITRMVASG HHHHHHHHHHHCEEEEECCCCCEEEECCCCCCCEEEEEECCCEEECCCCCHHHHHHHHCC VPDMPAKNVTIVDQDGNLLSQQPSSSGLDANQLKYVQQVEHNTQKRIDAILAPMFGAGNT CCCCCCCCEEEEECCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RSQVSADIDFTRSEQTSESYAPNGTQQQAAIRSQQTSSSVESAQSGAGGVPGALSNTPPQ CCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC PASAPITGASGAAGTPPTPISDRKDSTTNYELDKTVRHTEAPTGGIKRLSVAVVVNNLPV CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCHHEEEEEEEECCCCE VDAKGHVTMQPLTADKLKQVEQLVKDAMGYDAKRGDSVNVVNSVFTTTADPLADLPWWRQ EECCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCC PDMIALAKDAAKWLGIAAAAAALYFMFVRPAMRRAFPPPEAAVANPALAAALGSPDEPAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCCCCCCC DGLPAPDSVVAEDSPEAALLAFEADKHRYERNLDYAKMIARQDPKIVAAVVKNWVSDER CCCCCCCCCCCCCCCCEEEEEEECHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503; 1551848; 8224881 [H]