| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is dppD [H]
Identifier: 238028867
GI number: 238028867
Start: 3790338
End: 3791333
Strand: Reverse
Name: dppD [H]
Synonym: bglu_1g33320
Alternate gene names: 238028867
Gene position: 3791333-3790338 (Counterclockwise)
Preceding gene: 238028868
Following gene: 238028866
Centisome position: 97.05
GC content: 68.98
Gene sequence:
>996_bases ATGGACACTCTTCTGACCATCCGCAATCTGGCGGTCAATTTCAACGGCCTCGCCGCCGTCGACCGGATCGACCTGAGCGT CGCGCCGGGCGAGGTGGTGGGCGTGGTGGGCGAATCGGGCTCCGGCAAGAGCGTGACGATGATGGCGCTGATGGGGCTGG TGGACGCGCCCGGCATCGTCAGCGCCGACGAGCTCACCTTCAACGGCGTCGATCTGCTGCGGGCGAGCCCGCGCCAGCGC CGCCGCATCATCGGCAAGGACATCGCGATGGTGTTCCAGGACGCGCTGTCGAGCCTGAACCCCAGCTATACGGTCGGCTA TCAGATCCGCGAGGTGCTGAAGCTGCACGAGGGGCTGCGCGGCGATGCGCTGAAGCGTCGGGCCCTCGAGCTGCTCGACC AGGTCGGCATTCCCGACGCGAAGAACCGCATCGACACGTTCCCGCACCAGATGTCGGGCGGCATGAACCAGCGCGTGATG ATCGCGATGGCGGTGGCCTGCAACCCGAAGCTGCTGATCGCCGACGAACCGACCACCGCGCTGGACGTGACGATCCAGGC CCAGATCATGGATCTGCTGGTGTCGCTGCAGAAGGAGCGCGGCATGGCGCTGGTGCTGATCTCGCACGATCTGGCCGTGG TCTCGGAGGTCGCGCAGCGCGTCGCGGTGATGTACGCGGGCGAGATCATCGAGACCAACCGCGTGCCCGACATCTTCGCC GCGCCGCATCACCCGTATACTGAGGCGCTGCTCGCGGCGATTCCGGAGCACAACGCGGGCGCCGAGCGTCTTGCCGCGCT GCCCGGGATGGTGCCGGGGCGCGACGACCGGCCCGCCGGCTGCCTGTTCGCGCCGCGCTGCCGCTACGCCGTGGCCGCCT GCGACGCCGCGCGTCCGGCGCTCGCCGAGCTCGCGCCCGGCGACGCCATGATGCGCGCGCGCTGCATCAAGCCCTTGAAC CTGCAAGCGATCGAGCCATCGGGAGGGACACGATGA
Upstream 100 bases:
>100_bases TGCCGGGCCTCGCGATCCTGATCTCGGTGCTGGCGATCAACCTGCTCGGCGACGGCCTGCGCGACGCGCTCGACCCGAAA CTGAAACGGATGGCCTGACC
Downstream 100 bases:
>100_bases ACGCAGTCCACGCTCAGCCACCGGCAGCCGCCCGCGGCGACGCGGTGCTCGTCGCCGACGGGCTCGCGAAACATTATTCG GTGCGCCGCGGCATGTTCGG
Product: peptide ABC transporter ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MDTLLTIRNLAVNFNGLAAVDRIDLSVAPGEVVGVVGESGSGKSVTMMALMGLVDAPGIVSADELTFNGVDLLRASPRQR RRIIGKDIAMVFQDALSSLNPSYTVGYQIREVLKLHEGLRGDALKRRALELLDQVGIPDAKNRIDTFPHQMSGGMNQRVM IAMAVACNPKLLIADEPTTALDVTIQAQIMDLLVSLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEIIETNRVPDIFA APHHPYTEALLAAIPEHNAGAERLAALPGMVPGRDDRPAGCLFAPRCRYAVAACDAARPALAELAPGDAMMRARCIKPLN LQAIEPSGGTR
Sequences:
>Translated_331_residues MDTLLTIRNLAVNFNGLAAVDRIDLSVAPGEVVGVVGESGSGKSVTMMALMGLVDAPGIVSADELTFNGVDLLRASPRQR RRIIGKDIAMVFQDALSSLNPSYTVGYQIREVLKLHEGLRGDALKRRALELLDQVGIPDAKNRIDTFPHQMSGGMNQRVM IAMAVACNPKLLIADEPTTALDVTIQAQIMDLLVSLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEIIETNRVPDIFA APHHPYTEALLAAIPEHNAGAERLAALPGMVPGRDDRPAGCLFAPRCRYAVAACDAARPALAELAPGDAMMRARCIKPLN LQAIEPSGGTR >Mature_331_residues MDTLLTIRNLAVNFNGLAAVDRIDLSVAPGEVVGVVGESGSGKSVTMMALMGLVDAPGIVSADELTFNGVDLLRASPRQR RRIIGKDIAMVFQDALSSLNPSYTVGYQIREVLKLHEGLRGDALKRRALELLDQVGIPDAKNRIDTFPHQMSGGMNQRVM IAMAVACNPKLLIADEPTTALDVTIQAQIMDLLVSLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEIIETNRVPDIFA APHHPYTEALLAAIPEHNAGAERLAALPGMVPGRDDRPAGCLFAPRCRYAVAACDAARPALAELAPGDAMMRARCIKPLN LQAIEPSGGTR
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42741659, Length=215, Percent_Identity=32.5581395348837, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI105990541, Length=215, Percent_Identity=27.906976744186, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI116734710, Length=221, Percent_Identity=25.7918552036199, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI47078218, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI45446740, Length=217, Percent_Identity=28.110599078341, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI21536376, Length=236, Percent_Identity=27.5423728813559, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI153792144, Length=211, Percent_Identity=24.6445497630332, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9961250, Length=217, Percent_Identity=31.7972350230415, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI4505771, Length=217, Percent_Identity=31.7972350230415, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI9961252, Length=217, Percent_Identity=31.7972350230415, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9665248, Length=213, Percent_Identity=28.6384976525822, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1789963, Length=321, Percent_Identity=57.9439252336449, Blast_Score=380, Evalue=1e-107, Organism=Escherichia coli, GI48994883, Length=322, Percent_Identity=45.3416149068323, Blast_Score=276, Evalue=1e-75, Organism=Escherichia coli, GI1787548, Length=303, Percent_Identity=42.2442244224422, Blast_Score=251, Evalue=6e-68, Organism=Escherichia coli, GI145693107, Length=267, Percent_Identity=49.063670411985, Blast_Score=250, Evalue=9e-68, Organism=Escherichia coli, GI1787759, Length=320, Percent_Identity=42.1875, Blast_Score=250, Evalue=1e-67, Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=47.3076923076923, Blast_Score=230, Evalue=7e-62, Organism=Escherichia coli, GI1787500, Length=331, Percent_Identity=38.6706948640483, Blast_Score=211, Evalue=6e-56, Organism=Escherichia coli, GI1789962, Length=288, Percent_Identity=37.8472222222222, Blast_Score=200, Evalue=1e-52, Organism=Escherichia coli, GI1787758, Length=332, Percent_Identity=39.4578313253012, Blast_Score=198, Evalue=4e-52, Organism=Escherichia coli, GI48994997, Length=251, Percent_Identity=34.6613545816733, Blast_Score=147, Evalue=9e-37, Organism=Escherichia coli, GI1789890, Length=249, Percent_Identity=38.1526104417671, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI1789891, Length=244, Percent_Identity=37.7049180327869, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1786398, Length=298, Percent_Identity=33.5570469798658, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=28.030303030303, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1788225, Length=251, Percent_Identity=32.2709163346614, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1789032, Length=230, Percent_Identity=33.9130434782609, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI87081791, Length=251, Percent_Identity=32.2709163346614, Blast_Score=115, Evalue=5e-27, Organism=Escherichia coli, GI1787029, Length=233, Percent_Identity=30.0429184549356, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=29.5275590551181, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=30.8333333333333, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1786703, Length=202, Percent_Identity=35.6435643564356, Blast_Score=100, Evalue=9e-23, Organism=Escherichia coli, GI1788761, Length=241, Percent_Identity=29.8755186721992, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790162, Length=246, Percent_Identity=26.8292682926829, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI87081834, Length=203, Percent_Identity=32.0197044334975, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1789873, Length=215, Percent_Identity=32.5581395348837, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787370, Length=252, Percent_Identity=28.1746031746032, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1787105, Length=221, Percent_Identity=33.4841628959276, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=229, Percent_Identity=31.0043668122271, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786872, Length=260, Percent_Identity=31.1538461538462, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1788450, Length=239, Percent_Identity=26.7782426778243, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1787712, Length=270, Percent_Identity=26.2962962962963, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786345, Length=239, Percent_Identity=28.4518828451883, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1786563, Length=241, Percent_Identity=29.045643153527, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787164, Length=210, Percent_Identity=33.8095238095238, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI48995001, Length=242, Percent_Identity=30.5785123966942, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI48994943, Length=226, Percent_Identity=26.9911504424779, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1789593, Length=239, Percent_Identity=27.6150627615063, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=30.8016877637131, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786253, Length=209, Percent_Identity=29.1866028708134, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788644, Length=181, Percent_Identity=28.7292817679558, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87081782, Length=240, Percent_Identity=25.4166666666667, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1786319, Length=227, Percent_Identity=27.3127753303965, Blast_Score=78, Evalue=9e-16, Organism=Escherichia coli, GI1790467, Length=254, Percent_Identity=24.4094488188976, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788165, Length=214, Percent_Identity=28.0373831775701, Blast_Score=75, Evalue=8e-15, Organism=Escherichia coli, GI87082267, Length=250, Percent_Identity=25.2, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789586, Length=230, Percent_Identity=27.8260869565217, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1790525, Length=246, Percent_Identity=26.8292682926829, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1788053, Length=210, Percent_Identity=27.6190476190476, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787792, Length=222, Percent_Identity=29.2792792792793, Blast_Score=72, Evalue=6e-14, Organism=Escherichia coli, GI1790190, Length=244, Percent_Identity=27.8688524590164, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1789864, Length=241, Percent_Identity=24.4813278008299, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788472, Length=232, Percent_Identity=25.8620689655172, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790534, Length=234, Percent_Identity=31.6239316239316, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787972, Length=239, Percent_Identity=26.3598326359833, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787112, Length=251, Percent_Identity=26.6932270916335, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=25.2100840336134, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533608, Length=216, Percent_Identity=26.8518518518519, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17558664, Length=214, Percent_Identity=30.3738317757009, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI212646699, Length=221, Percent_Identity=27.1493212669683, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211015, Length=249, Percent_Identity=26.5060240963855, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71996809, Length=249, Percent_Identity=26.5060240963855, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193211017, Length=249, Percent_Identity=26.5060240963855, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17510237, Length=230, Percent_Identity=24.3478260869565, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17541710, Length=217, Percent_Identity=28.110599078341, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983523, Length=249, Percent_Identity=23.6947791164659, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983516, Length=249, Percent_Identity=23.6947791164659, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983510, Length=249, Percent_Identity=23.6947791164659, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17567265, Length=225, Percent_Identity=27.5555555555556, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI115534520, Length=232, Percent_Identity=29.7413793103448, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=238, Percent_Identity=26.4705882352941, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6323217, Length=243, Percent_Identity=27.9835390946502, Blast_Score=74, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6319856, Length=205, Percent_Identity=30.7317073170732, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6324498, Length=270, Percent_Identity=22.2222222222222, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI24643674, Length=225, Percent_Identity=24.4444444444444, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI28574150, Length=211, Percent_Identity=25.5924170616114, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI116007328, Length=211, Percent_Identity=25.5924170616114, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24666092, Length=225, Percent_Identity=24.4444444444444, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI23397593, Length=243, Percent_Identity=28.3950617283951, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28573573, Length=230, Percent_Identity=23.9130434782609, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI28573571, Length=230, Percent_Identity=23.9130434782609, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI161076684, Length=235, Percent_Identity=25.531914893617, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581617, Length=235, Percent_Identity=25.531914893617, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581615, Length=235, Percent_Identity=25.531914893617, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076682, Length=233, Percent_Identity=25.7510729613734, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35398; Mature: 35398
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTLLTIRNLAVNFNGLAAVDRIDLSVAPGEVVGVVGESGSGKSVTMMALMGLVDAPGIV CCCCEEEHHHEECCCCEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC SADELTFNGVDLLRASPRQRRRIIGKDIAMVFQDALSSLNPSYTVGYQIREVLKLHEGLR CCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCC GDALKRRALELLDQVGIPDAKNRIDTFPHQMSGGMNQRVMIAMAVACNPKLLIADEPTTA CHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCCCEEEEEEEEECCCEEEEECCCCCE LDVTIQAQIMDLLVSLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEIIETNRVPDIFA EEEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHCCCCCCCEEE APHHPYTEALLAAIPEHNAGAERLAALPGMVPGRDDRPAGCLFAPRCRYAVAACDAARPA CCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCH LAELAPGDAMMRARCIKPLNLQAIEPSGGTR HHHCCCCHHHHHHHHCCCCCCEEECCCCCCC >Mature Secondary Structure MDTLLTIRNLAVNFNGLAAVDRIDLSVAPGEVVGVVGESGSGKSVTMMALMGLVDAPGIV CCCCEEEHHHEECCCCEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCC SADELTFNGVDLLRASPRQRRRIIGKDIAMVFQDALSSLNPSYTVGYQIREVLKLHEGLR CCCCEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCCC GDALKRRALELLDQVGIPDAKNRIDTFPHQMSGGMNQRVMIAMAVACNPKLLIADEPTTA CHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHCCCCCCEEEEEEEEECCCEEEEECCCCCE LDVTIQAQIMDLLVSLQKERGMALVLISHDLAVVSEVAQRVAVMYAGEIIETNRVPDIFA EEEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHCCCCCCCEEE APHHPYTEALLAAIPEHNAGAERLAALPGMVPGRDDRPAGCLFAPRCRYAVAACDAARPA CCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCH LAELAPGDAMMRARCIKPLNLQAIEPSGGTR HHHCCCCHHHHHHHHCCCCCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]