| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is 238028811
Identifier: 238028811
GI number: 238028811
Start: 3727160
End: 3727951
Strand: Direct
Name: 238028811
Synonym: bglu_1g32750
Alternate gene names: NA
Gene position: 3727160-3727951 (Clockwise)
Preceding gene: 238028808
Following gene: 238028812
Centisome position: 95.41
GC content: 81.06
Gene sequence:
>792_bases ATGACCGCATCCGCCGTAACGTCCGCCGCCGCGCTGCCCGACGCGCGCGTGGTGCTGATCACGGGCGCGGCACCGATTCC GGCTGGCCCGGCCGGGCCGGCCGGAATCGGTGCCGCGCTGGCGCGCGCGTTCGCGCGGCGCGGCTGGGACGTGGCGCTCG CGGTGGACGCCGAGGCGGCCCGGCCCGGGGCCGAGGCGCTGGCCGCCGAGATCGCCGCGCTCGGCCGCCGCGCGGCGGTG CTGGTGGCCGACCTCGCCAGCGAAGCGGGCGCCGCCGCGCTGGTGCCGGCCTGCTGCGACGCGCTCGGCCGGCCCGGCTG CATCGTCTGCCACGGCGATCCGGCCCCGGCCGACGACGCGCTCAACGCCGGCCACGCCTCGCTGACCGCCGCGTTCGCGC GGCTCGTCGCGGCGCCGGTGGTGCTCGGCCGCGCGCTCGCGGCCGCCACCCCGGAGGCCGCGCGCGAGGACGAGCGGCTG CGGGCGGTGCTGATCCACGTGCTCGACGACGCGCTGTACCATCCGGCACCGCAGCGGCTCTCGCAGGCGCTGGCACAGGC CGCGCTGCATCGCGCCACCGCCGCGCAGGCACTGGCGCTGGCGCCGAAGGTGCGCGTGGCGGGGCTGGTGCGCGGGCGCG CGCCGCACGCCGACGAGCTGGCCGAGGCGGCCTGCTATCTGGCCGAGGCGCCGGGCGTGACGGGCGCCACGCTCGCCGTG GACGGCGGCGAGCACCTCGCGCCGCCTGCCGGCGACGGCCGGGCCGAAGCGGCCCTCGCCGGCCGCCCCTGA
Upstream 100 bases:
>100_bases CAGCGACGCGGCCAGCGTTTCGGACTGGGCGAGCGCGTCCGGGCCGGGAACGGGTAAACTAGCGGGTTCGTGAGCTTTCG GGTTCATCCCGGCATTGTAA
Downstream 100 bases:
>100_bases CTCGCGTGCCAGCACGCCAACCCGCAACCTGATTGGAACCACCATGTTTTCCGCCCTCCTGCACCCCAGGCTCGCCGACT GCCGCAGACTCTATCTGCGC
Product: short-chain dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 262
Protein sequence:
>263_residues MTASAVTSAAALPDARVVLITGAAPIPAGPAGPAGIGAALARAFARRGWDVALAVDAEAARPGAEALAAEIAALGRRAAV LVADLASEAGAAALVPACCDALGRPGCIVCHGDPAPADDALNAGHASLTAAFARLVAAPVVLGRALAAATPEAAREDERL RAVLIHVLDDALYHPAPQRLSQALAQAALHRATAAQALALAPKVRVAGLVRGRAPHADELAEAACYLAEAPGVTGATLAV DGGEHLAPPAGDGRAEAALAGRP
Sequences:
>Translated_263_residues MTASAVTSAAALPDARVVLITGAAPIPAGPAGPAGIGAALARAFARRGWDVALAVDAEAARPGAEALAAEIAALGRRAAV LVADLASEAGAAALVPACCDALGRPGCIVCHGDPAPADDALNAGHASLTAAFARLVAAPVVLGRALAAATPEAAREDERL RAVLIHVLDDALYHPAPQRLSQALAQAALHRATAAQALALAPKVRVAGLVRGRAPHADELAEAACYLAEAPGVTGATLAV DGGEHLAPPAGDGRAEAALAGRP >Mature_262_residues TASAVTSAAALPDARVVLITGAAPIPAGPAGPAGIGAALARAFARRGWDVALAVDAEAARPGAEALAAEIAALGRRAAVL VADLASEAGAAALVPACCDALGRPGCIVCHGDPAPADDALNAGHASLTAAFARLVAAPVVLGRALAAATPEAAREDERLR AVLIHVLDDALYHPAPQRLSQALAQAALHRATAAQALALAPKVRVAGLVRGRAPHADELAEAACYLAEAPGVTGATLAVD GGEHLAPPAGDGRAEAALAGRP
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25756; Mature: 25624
Theoretical pI: Translated: 6.15; Mature: 6.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASAVTSAAALPDARVVLITGAAPIPAGPAGPAGIGAALARAFARRGWDVALAVDAEAA CCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHC RPGAEALAAEIAALGRRAAVLVADLASEAGAAALVPACCDALGRPGCIVCHGDPAPADDA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHH LNAGHASLTAAFARLVAAPVVLGRALAAATPEAAREDERLRAVLIHVLDDALYHPAPQRL HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH SQALAQAALHRATAAQALALAPKVRVAGLVRGRAPHADELAEAACYLAEAPGVTGATLAV HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE DGGEHLAPPAGDGRAEAALAGRP CCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TASAVTSAAALPDARVVLITGAAPIPAGPAGPAGIGAALARAFARRGWDVALAVDAEAA CCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHC RPGAEALAAEIAALGRRAAVLVADLASEAGAAALVPACCDALGRPGCIVCHGDPAPADDA CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCHH LNAGHASLTAAFARLVAAPVVLGRALAAATPEAAREDERLRAVLIHVLDDALYHPAPQRL HCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH SQALAQAALHRATAAQALALAPKVRVAGLVRGRAPHADELAEAACYLAEAPGVTGATLAV HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEE DGGEHLAPPAGDGRAEAALAGRP CCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA