| Definition | Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_012724 |
| Length | 3,906,507 |
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The map label for this gene is ybeD [C]
Identifier: 238028743
GI number: 238028743
Start: 3643015
End: 3643323
Strand: Reverse
Name: ybeD [C]
Synonym: bglu_1g32070
Alternate gene names: 238028743
Gene position: 3643323-3643015 (Counterclockwise)
Preceding gene: 238028744
Following gene: 238028741
Centisome position: 93.26
GC content: 60.19
Gene sequence:
>309_bases ATGACCGAACCGACCAAGACAGTCGAGCTGACTGGTGCGATCGATGCCAGGAAGGACACGCTGCTCGAATTTCCCTGCGA TTTCCCGATCAAGATCATGGGCCGCGCGCATCCCGAGTTCAAGGACACCATCTTCAAGGTGGTGGCCGTGCACGACAACG AGATCGATCTGGAGAAGATCGAGGAGCGTTCGTCCAGCGGCGGCAACTACACGGGGCTGACCATCACCGTGCGCGCCACC AGCCAGCAGCAGCTCGACGACATCTATCGCTCGCTGACCGGCCATCCGATGGTCAAGGTCGTGCTGTAG
Upstream 100 bases:
>100_bases CGTGTTCATCGCGCTCTACGAGGCCTACCAGCGCGCCAAGGCGCGCGAGCTGGCGCTCGCCTGAACACCCGTTTTCACCG ATTCCTTCTGGAGAAGCCAA
Downstream 100 bases:
>100_bases ACCCGCGCCGGCGGGCGCCGCCCGCGCGCCGCCGCGTCTTGCTTGCGCCCTTGCCGGGCAGCCTTGCCCGCGCCGCTGCC TTGCTGCCGGCGCTCGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 102; Mature: 101
Protein sequence:
>102_residues MTEPTKTVELTGAIDARKDTLLEFPCDFPIKIMGRAHPEFKDTIFKVVAVHDNEIDLEKIEERSSSGGNYTGLTITVRAT SQQQLDDIYRSLTGHPMVKVVL
Sequences:
>Translated_102_residues MTEPTKTVELTGAIDARKDTLLEFPCDFPIKIMGRAHPEFKDTIFKVVAVHDNEIDLEKIEERSSSGGNYTGLTITVRAT SQQQLDDIYRSLTGHPMVKVVL >Mature_101_residues TEPTKTVELTGAIDARKDTLLEFPCDFPIKIMGRAHPEFKDTIFKVVAVHDNEIDLEKIEERSSSGGNYTGLTITVRATS QQQLDDIYRSLTGHPMVKVVL
Specific function: Unknown
COG id: COG2921
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0250 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007454 [H]
Pfam domain/function: PF04359 DUF493 [H]
EC number: NA
Molecular weight: Translated: 11420; Mature: 11289
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPTKTVELTGAIDARKDTLLEFPCDFPIKIMGRAHPEFKDTIFKVVAVHDNEIDLEKI CCCCCCEEEEEECCCCCCCCEEECCCCCCEEEECCCCCCHHHHEEEEEEECCCCCCHHHH EERSSSGGNYTGLTITVRATSQQQLDDIYRSLTGHPMVKVVL HHHCCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEEC >Mature Secondary Structure TEPTKTVELTGAIDARKDTLLEFPCDFPIKIMGRAHPEFKDTIFKVVAVHDNEIDLEKI CCCCCEEEEEECCCCCCCCEEECCCCCCEEEECCCCCCHHHHEEEEEEECCCCCCHHHH EERSSSGGNYTGLTITVRATSQQQLDDIYRSLTGHPMVKVVL HHHCCCCCCEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA