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The map label for this gene is cydB [H]

Identifier: 238028684

GI number: 238028684

Start: 3577148

End: 3578284

Strand: Direct

Name: cydB [H]

Synonym: bglu_1g31480

Alternate gene names: 238028684

Gene position: 3577148-3578284 (Clockwise)

Preceding gene: 238028683

Following gene: 238028699

Centisome position: 91.57

GC content: 68.34

Gene sequence:

>1137_bases
ATGGACTACGCTACTCTGAAGGTGATCTGGTGGGTGCTGGTCGGCACGCTGCTGATCGGCTTCGCGCTCACCGACGGCTT
CGACATGGGCGCCACCGCGCTGCTGCCGTTCCTCGGCAAAACCGACGACGAGCGGCGCATCATCGTCAACACGGTCGGCG
CGACCTGGGAAGGCAACCAGGTCTGGCTGATCACGGCCGGCGGCGCGATGTTCGCGGCCTGGCCGCTGGTGTACGCGGCC
TCGTTCTCGGGCTTCTACTTCGCGATGCTGCTGGTGCTGTTCGCGCTGTTCTTCCGGCCGGTCGGCTTCGACTTCCGCAG
CAAGCGCACCGACCCGCGCTGGCGCCGCGGCTGGGACTGGGGGCTCTTCGTCGGCGGCTTCGTGCCGGCGCTGGTGTTCG
GCGTGGCCTTCGGCAACCTGCTCGAAGGCGTGCCGTTCGCGTTCGACAACGACCTGCGCGTGACCTACACGGGCGGCTTC
TGGGCCCTGCTCAATCCGTTCGCGCTGCTCTGCGGGCTCGTCTCGCTGACCATGCTGCTCGCGCACGGCGCCGCGTTCAT
CCGCATGAAGACCGACGGCGTGATCGCGCAGCGCGCGGGCCGCGCCCTGCGTCTGAGCGCGCTGGCCGCGGTGGTGCTGT
TCGCGGTCGCCGGGGCGCTGATCGCCTCGTCGATCGGCGGCTATCACATCACGCAGGCCGCCCCGCTCGACAGCGTCGCG
AATCCGCTAATGAAGCAGGTGGCGGCTGGCCACGGACTGTGGCTCTCGAACTACGGCACCTATCCGTGGATGATCGTCGC
GCCCGTGATCGCCTTCGCGGGCGGCCTGCTGGCCGCGCTGCTGGCCGGGTCGCGGTTCGAGAAGACGGCCTTCGTGGCCA
CCGGGCTGATGATCGTCGGCGTGATCCTGACGGCCGGCTTCTCGATGTTCCCGTTCATCATGCCGTCCTCGCTCGACCCG
CGCAGCAGCCTGACCGTCTGGGACTCGACCTCCAGCCGTCTGACGCTCGAGGTCATGCTCGGTGCCGTGATCGTGTTCCT
GCCGCTGGTCCTGCTCTATACGGGCTGGGTCTACCGCGTGATGCGCGGCAAGGTCACCCCGCAGGTGCTCAGCGACAACC
GCCATACGCTGTACTGA

Upstream 100 bases:

>100_bases
CCGTCGGCGCTGCACACCGGGCGTTATCACCACGAGCAGCAGGCCGCCGGCTCGGCCGCCTGACGCGTGCCGCTTCACCG
AACCCTGACAAGGAATCGTT

Downstream 100 bases:

>100_bases
CCGGCGCGCCGGGCGCCCGCCGCCCGGCCGCTACCCCGAACCCACTCTTTCGGAGCCCGACACATGTGGTACTTCACCTG
GATTCTCGGCATTGGCGTCG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MDYATLKVIWWVLVGTLLIGFALTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDFRSKRTDPRWRRGWDWGLFVGGFVPALVFGVAFGNLLEGVPFAFDNDLRVTYTGGF
WALLNPFALLCGLVSLTMLLAHGAAFIRMKTDGVIAQRAGRALRLSALAAVVLFAVAGALIASSIGGYHITQAAPLDSVA
NPLMKQVAAGHGLWLSNYGTYPWMIVAPVIAFAGGLLAALLAGSRFEKTAFVATGLMIVGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSRLTLEVMLGAVIVFLPLVLLYTGWVYRVMRGKVTPQVLSDNRHTLY

Sequences:

>Translated_378_residues
MDYATLKVIWWVLVGTLLIGFALTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDFRSKRTDPRWRRGWDWGLFVGGFVPALVFGVAFGNLLEGVPFAFDNDLRVTYTGGF
WALLNPFALLCGLVSLTMLLAHGAAFIRMKTDGVIAQRAGRALRLSALAAVVLFAVAGALIASSIGGYHITQAAPLDSVA
NPLMKQVAAGHGLWLSNYGTYPWMIVAPVIAFAGGLLAALLAGSRFEKTAFVATGLMIVGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSRLTLEVMLGAVIVFLPLVLLYTGWVYRVMRGKVTPQVLSDNRHTLY
>Mature_378_residues
MDYATLKVIWWVLVGTLLIGFALTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQVWLITAGGAMFAAWPLVYAA
SFSGFYFAMLLVLFALFFRPVGFDFRSKRTDPRWRRGWDWGLFVGGFVPALVFGVAFGNLLEGVPFAFDNDLRVTYTGGF
WALLNPFALLCGLVSLTMLLAHGAAFIRMKTDGVIAQRAGRALRLSALAAVVLFAVAGALIASSIGGYHITQAAPLDSVA
NPLMKQVAAGHGLWLSNYGTYPWMIVAPVIAFAGGLLAALLAGSRFEKTAFVATGLMIVGVILTAGFSMFPFIMPSSLDP
RSSLTVWDSTSSRLTLEVMLGAVIVFLPLVLLYTGWVYRVMRGKVTPQVLSDNRHTLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=378, Percent_Identity=51.8518518518518, Blast_Score=393, Evalue=1e-110,
Organism=Escherichia coli, GI1787213, Length=377, Percent_Identity=52.2546419098143, Blast_Score=384, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 40993; Mature: 40993

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYATLKVIWWVLVGTLLIGFALTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDFRSKRTDPRWRRGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHCCCCH
GLFVGGFVPALVFGVAFGNLLEGVPFAFDNDLRVTYTGGFWALLNPFALLCGLVSLTMLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIRMKTDGVIAQRAGRALRLSALAAVVLFAVAGALIASSIGGYHITQAAPLDSVA
HCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHH
NPLMKQVAAGHGLWLSNYGTYPWMIVAPVIAFAGGLLAALLAGSRFEKTAFVATGLMIVG
HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPRSSLTVWDSTSSRLTLEVMLGAVIVFLPLVLLYTGWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTPQVLSDNRHTLY
HHCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MDYATLKVIWWVLVGTLLIGFALTDGFDMGATALLPFLGKTDDERRIIVNTVGATWEGNQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCE
VWLITAGGAMFAAWPLVYAASFSGFYFAMLLVLFALFFRPVGFDFRSKRTDPRWRRGWDW
EEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHCCCCH
GLFVGGFVPALVFGVAFGNLLEGVPFAFDNDLRVTYTGGFWALLNPFALLCGLVSLTMLL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
AHGAAFIRMKTDGVIAQRAGRALRLSALAAVVLFAVAGALIASSIGGYHITQAAPLDSVA
HCCCEEEEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHH
NPLMKQVAAGHGLWLSNYGTYPWMIVAPVIAFAGGLLAALLAGSRFEKTAFVATGLMIVG
HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VILTAGFSMFPFIMPSSLDPRSSLTVWDSTSSRLTLEVMLGAVIVFLPLVLLYTGWVYRV
HHHHCCHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
MRGKVTPQVLSDNRHTLY
HHCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]