Click here to switch to the map view.

The map label for this gene is cydA [H]

Identifier: 238028683

GI number: 238028683

Start: 3575536

End: 3577110

Strand: Direct

Name: cydA [H]

Synonym: bglu_1g31470

Alternate gene names: 238028683

Gene position: 3575536-3577110 (Clockwise)

Preceding gene: 238028682

Following gene: 238028684

Centisome position: 91.53

GC content: 64.7

Gene sequence:

>1575_bases
ATGATCAGCAGTGAAGTCGTCGATCTATCACGCCTGCAGTTCGGCGTCACCGCGCTTTACCATTTCCTGTTCGTTCCGCT
CACGCTCGGCCTGTCCTGGCTGCTCGTCATCATGGAGGCCGTTTATGTGATGACGGGCAAGCAGGTCTACAAGGACATGA
CCCAGTTCTGGGGCAAGCTGTTCGGCATCAATTTCGCGATGGGCGTGACCACCGGCATCACGCTCGAATTCCAGTTCGGC
ACCAACTGGTCCTACTACTCGCACTACGTCGGTGACATCTTCGGCGTGCCGCTCGCCGTCGAAGGGCTGATGGCGTTCTT
CCTCGAATCGACCTTCGTCGGGCTGTTCTTCTTCGGCTGGAACCGGCTCTCGAAGGTCAAGCATCTGATCGTCACCTTCC
TCGTCGCGCTCGGCTCGAACCTGTCGGCGCTCTGGATCCTGGTGGCGAACGGCTGGATGAACAACCCGGTCGGCGCGCAA
TTCAACTACCAGACCATGCGCATGGAGCTGGCGAGCCTGTCCGACGTGCTGTTCAACCCGGTCGCGCAGGTCAAGTTCGT
GCATACCGTCTCGGCCGGCTACGTGACCGCCTCGATGTTCGTGCTCGGCGTGTCGTCGTGGTACCTGCTGCGCCGCCGCG
ACACCGCGTTCGCGCTGCGCTCGTTCGCGGTCGCGGCCGGCTTCGGGCTCGCCTCGGCGCTCTGCGTGATCGTGCTCGGC
GACGAGTCCGGCTACACGACGGGCGAAGTGCAGCAGGTGAAGCTCGCCGCGATCGAATCGGAATGGGATACCCAGCCGGC
ACCGGCCGCCTTCACCGTGTTCGGCATCCCGAACCAGGCGACGCAGCACACCGACTATGCGATCCGGATCCCGTATGCGC
TCGGCTTGATCGCGACGCGCTCGATCGACGAGCCGGTGGTAGGCCTCAACGACCTGATCAAGCGCAGCGAGGACCACATC
CGCAGCGGCATGGTCGCCTACCAGGCGCTGCAGAAGCTCAAGTCCGGCGACACCAGCGAGGCCACCCGCGCGCAGTTCGA
CGCGCACAAGGCCTACCTCGGCTACGGGCTGATGCTCAAGCAATTCACCGCCAACGTGACCGATGCCACGCCGCAGCAGA
TCGCCGAAGCCGCGAAGAAGACGATCCCGCCCGTGGCACCCGTGTTCTTCTCGTTCCGCTTGATGGTGCTGTTCGGCTTC
CTGCTGCTCGCCACCTTCGTGCTCGCGTTCTGGTTCTCGTTGAAGCGCGACCTGCTGCAGCCGAAGCGCCGCTGGTTCCT
GCGCTGGGCCGTCTGGGCGATCCCGCTGCCGTGGCTGGCGGCCGAGTTCGGCTGGGTGGTCGCGGAAGTCGGCCGCCAGC
CGTGGACGATCGCCGGCATCCTGCCGACGCACCTGTCCGCGTCGAGCCTCGTGTCGAGCGACCTGTACCTGAGCATCGCC
GGCTTCGTCGCGTTCTATACCGCACTGTTCGTGATCGAGATCATGCTGATGTTCAAGTACGCGCGGCTCGGGCCGTCGGC
GCTGCACACCGGGCGTTATCACCACGAGCAGCAGGCCGCCGGCTCGGCCGCCTGA

Upstream 100 bases:

>100_bases
TTCAATCATCCACAAGCGGAGCACATGTCGCTGCCAGCCGCCGCGGTCGCCGCGCAACTGCTCGGGACGACCGCCGTCCG
CTCTTCCACCGGGGACCACC

Downstream 100 bases:

>100_bases
CGCGTGCCGCTTCACCGAACCCTGACAAGGAATCGTTATGGACTACGCTACTCTGAAGGTGATCTGGTGGGTGCTGGTCG
GCACGCTGCTGATCGGCTTC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MISSEVVDLSRLQFGVTALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLIVTFLVALGSNLSALWILVANGWMNNPVGAQ
FNYQTMRMELASLSDVLFNPVAQVKFVHTVSAGYVTASMFVLGVSSWYLLRRRDTAFALRSFAVAAGFGLASALCVIVLG
DESGYTTGEVQQVKLAAIESEWDTQPAPAAFTVFGIPNQATQHTDYAIRIPYALGLIATRSIDEPVVGLNDLIKRSEDHI
RSGMVAYQALQKLKSGDTSEATRAQFDAHKAYLGYGLMLKQFTANVTDATPQQIAEAAKKTIPPVAPVFFSFRLMVLFGF
LLLATFVLAFWFSLKRDLLQPKRRWFLRWAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLVSSDLYLSIA
GFVAFYTALFVIEIMLMFKYARLGPSALHTGRYHHEQQAAGSAA

Sequences:

>Translated_524_residues
MISSEVVDLSRLQFGVTALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLIVTFLVALGSNLSALWILVANGWMNNPVGAQ
FNYQTMRMELASLSDVLFNPVAQVKFVHTVSAGYVTASMFVLGVSSWYLLRRRDTAFALRSFAVAAGFGLASALCVIVLG
DESGYTTGEVQQVKLAAIESEWDTQPAPAAFTVFGIPNQATQHTDYAIRIPYALGLIATRSIDEPVVGLNDLIKRSEDHI
RSGMVAYQALQKLKSGDTSEATRAQFDAHKAYLGYGLMLKQFTANVTDATPQQIAEAAKKTIPPVAPVFFSFRLMVLFGF
LLLATFVLAFWFSLKRDLLQPKRRWFLRWAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLVSSDLYLSIA
GFVAFYTALFVIEIMLMFKYARLGPSALHTGRYHHEQQAAGSAA
>Mature_524_residues
MISSEVVDLSRLQFGVTALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKLFGINFAMGVTTGITLEFQFG
TNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGWNRLSKVKHLIVTFLVALGSNLSALWILVANGWMNNPVGAQ
FNYQTMRMELASLSDVLFNPVAQVKFVHTVSAGYVTASMFVLGVSSWYLLRRRDTAFALRSFAVAAGFGLASALCVIVLG
DESGYTTGEVQQVKLAAIESEWDTQPAPAAFTVFGIPNQATQHTDYAIRIPYALGLIATRSIDEPVVGLNDLIKRSEDHI
RSGMVAYQALQKLKSGDTSEATRAQFDAHKAYLGYGLMLKQFTANVTDATPQQIAEAAKKTIPPVAPVFFSFRLMVLFGF
LLLATFVLAFWFSLKRDLLQPKRRWFLRWAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLVSSDLYLSIA
GFVAFYTALFVIEIMLMFKYARLGPSALHTGRYHHEQQAAGSAA

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=515, Percent_Identity=64.4660194174757, Blast_Score=718, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=513, Percent_Identity=53.6062378167641, Blast_Score=556, Evalue=1e-159,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 58176; Mature: 58176

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSEVVDLSRLQFGVTALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVKHLIVTFLVALGSNLSALWILVANGWMNNPVGAQFNYQTMRMELASLSDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
VAQVKFVHTVSAGYVTASMFVLGVSSWYLLRRRDTAFALRSFAVAAGFGLASALCVIVLG
HHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEEC
DESGYTTGEVQQVKLAAIESEWDTQPAPAAFTVFGIPNQATQHTDYAIRIPYALGLIATR
CCCCCCCCCHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHC
SIDEPVVGLNDLIKRSEDHIRSGMVAYQALQKLKSGDTSEATRAQFDAHKAYLGYGLMLK
CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QFTANVTDATPQQIAEAAKKTIPPVAPVFFSFRLMVLFGFLLLATFVLAFWFSLKRDLLQ
HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKRRWFLRWAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLVSSDLYLSIA
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHHHH
GFVAFYTALFVIEIMLMFKYARLGPSALHTGRYHHEQQAAGSAA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHCCCCCC
>Mature Secondary Structure
MISSEVVDLSRLQFGVTALYHFLFVPLTLGLSWLLVIMEAVYVMTGKQVYKDMTQFWGKL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGINFAMGVTTGITLEFQFGTNWSYYSHYVGDIFGVPLAVEGLMAFFLESTFVGLFFFGW
HCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
NRLSKVKHLIVTFLVALGSNLSALWILVANGWMNNPVGAQFNYQTMRMELASLSDVLFNP
HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
VAQVKFVHTVSAGYVTASMFVLGVSSWYLLRRRDTAFALRSFAVAAGFGLASALCVIVLG
HHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEEC
DESGYTTGEVQQVKLAAIESEWDTQPAPAAFTVFGIPNQATQHTDYAIRIPYALGLIATR
CCCCCCCCCHHHHHHEEECCCCCCCCCCCEEEEEECCCCCCCCCCEEEECCHHHHHHHHC
SIDEPVVGLNDLIKRSEDHIRSGMVAYQALQKLKSGDTSEATRAQFDAHKAYLGYGLMLK
CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
QFTANVTDATPQQIAEAAKKTIPPVAPVFFSFRLMVLFGFLLLATFVLAFWFSLKRDLLQ
HHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PKRRWFLRWAVWAIPLPWLAAEFGWVVAEVGRQPWTIAGILPTHLSASSLVSSDLYLSIA
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCEEEEECCHHCCCHHHHHHHHHHHHHH
GFVAFYTALFVIEIMLMFKYARLGPSALHTGRYHHEQQAAGSAA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]