Definition Burkholderia glumae BGR1 chromosome chromosome 1, complete sequence.
Accession NC_012724
Length 3,906,507

Click here to switch to the map view.

The map label for this gene is yqcF [H]

Identifier: 238028566

GI number: 238028566

Start: 3443105

End: 3443680

Strand: Reverse

Name: yqcF [H]

Synonym: bglu_1g30300

Alternate gene names: 238028566

Gene position: 3443680-3443105 (Counterclockwise)

Preceding gene: 238028567

Following gene: 238028564

Centisome position: 88.15

GC content: 69.44

Gene sequence:

>576_bases
ATGGTTGCGCAGGGCAATGAAGCAGCAAGGCAGGCGGTCGCGCGCCATGTCATGACGGTGTTCGACGGCATGCCGAAAGC
GCAGCCGTTCTCGCGCGACGCGCGCGAGCTGGCGGTGCTGTCGGTGGCCGATGCGCCGGACGAGGACGTGGTGTCGTACA
GCACCGCCGGCCTGTGCGAGTTCGCGCTCGACACGGGCGGGTTCGACACGCGCATCGAGCTGTGCGGCGCGATGCCGGAC
GACGTGGCGCACTGGCCCGACATCCTCGCGGCCGCCGCGTTCGAGCTGGCCGCGGCGGCCTCGCCAGTGCGGCCCGGCGT
GGTGGTGCGCGAGGTGGTGGCGCGTTGCTATCCCAAGACCACGGTGCCGCATCTCTATCTGTCGATTCCGTTCATCTGGA
ACGACGGCGAGTTTCCCGAGTGCCGGCTGGACGGCATGCGCATCAACTGGCTGCAGTGCTTCCCGGTCTCGGACGAGGAG
GCACGGCTCGCGAGCGAGCTCGGCGCCGACCGCTTCGAAAGCCGGCTCGACGAGGCCGGCATCGACACCTACGACCTGCG
CCGCAAGTCGCTCTGA

Upstream 100 bases:

>100_bases
GGCCGGCATCGGGCACGGATCGTGCCGCGTCGGCCGCGGCCGGTTCGGTGCGCCGTGCCGGATGGTCCCGGCCCGCCGGA
CATGAAGGGGAGAACACGAG

Downstream 100 bases:

>100_bases
AGCCGAACGGCGCCGGCGTCGATCACCACTCGGCGACGCTGCCGTCCGCGTGACGCCACACCGGGTTGCGCCAGCGATGG
CCGACCTTCGCCATCTCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCEFALDTGGFDTRIELCGAMPD
DVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKTTVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEE
ARLASELGADRFESRLDEAGIDTYDLRRKSL

Sequences:

>Translated_191_residues
MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCEFALDTGGFDTRIELCGAMPD
DVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKTTVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEE
ARLASELGADRFESRLDEAGIDTYDLRRKSL
>Mature_191_residues
MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCEFALDTGGFDTRIELCGAMPD
DVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKTTVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEE
ARLASELGADRFESRLDEAGIDTYDLRRKSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020941 [H]

Pfam domain/function: PF05076 SUFU [H]

EC number: NA

Molecular weight: Translated: 20949; Mature: 20949

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCE
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHCCCCHHH
FALDTGGFDTRIELCGAMPDDVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKT
HHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
TVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEEARLASELGADRFESRLDEAG
CCCEEEEEEEEEECCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHHCC
IDTYDLRRKSL
CCHHHHHHCCC
>Mature Secondary Structure
MVAQGNEAARQAVARHVMTVFDGMPKAQPFSRDARELAVLSVADAPDEDVVSYSTAGLCE
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHEEEEEECCCCCHHHHHHCCCCHHH
FALDTGGFDTRIELCGAMPDDVAHWPDILAAAAFELAAAASPVRPGVVVREVVARCYPKT
HHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
TVPHLYLSIPFIWNDGEFPECRLDGMRINWLQCFPVSDEEARLASELGADRFESRLDEAG
CCCEEEEEEEEEECCCCCCCEEECCEEEEEEEEECCCCHHHHHHHHHCHHHHHHHHHHCC
IDTYDLRRKSL
CCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895 [H]